1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattattaataaccaactaatgattcagtaactgttattgtgttaatcagcaggatctgacgatgcttcactcaccgcgtgcattatctgagacttctgctgtgtgtccgccgtttccatcttattggtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCGAGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGC
species | Zea mays |
transcript | GRMZM2G004957_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTG AACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCEST: gi|37424661|gb|CF650063.1|CF650063
genomic: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTGgtaattatta ... gtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTC
EST: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTG AACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCEST: gi|71427126|gb|DR808176.1|DR808176
genomic: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTGgtaattatta ... gtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTC
EST: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTG AACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCEST: gi|50335113|gb|CO530239.1|CO530239
genomic: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTGgtaattatta ... gtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTC
EST: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTG AACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTC
genomic: TCGTGGTCATCATGAACCACGTCAGCCTCATCGAGATGCTCATGGACGTGgtaattatta ... gtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTC
attatctgagacttctgctgtgtgtccgccgtttccatcttattggtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCGAGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGC
atcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattattaataaccaactaatgattcagtaactgttattgtgttaatcagcaggatctgacgatgcttcactcaccgcgtgcattatctgagacttctgctgtgtgtccgccgtttccatcttattggtgcgtgcagAACCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCGAGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGC
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