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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggcagtactgacagacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA

Basic information

species Zea mays
transcript GRMZM2G004528_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 3
-----tgggcagtactgacagacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA
     ||| || |  |      | || |     |         | |  ||| | ||       ||  |||||        | ||   |||  ||    ||  ||||||||||| || ||||||||||| || ||||||||||| |||| |||||||||||| ||||| ||||||||||| ||||| || |||||||| |||||||
atctttggacaatgat--tgatctgttgaatacatccacaaatagttttcagatttgcagaacctgtttttccgttttctgatgg-ttatgaaaaaaatt--cagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G02210.1 (Glycine max), 3'ss of exon 3
------------------------------------------tgggcagtactgacagacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagtt---gaact---attgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA
                                               ||| ||   ||  | || |   |  |  |   | || | ||    ||  || |   |||||  | ||  || |   |  ||   | | ||   |||  ||||| || || |||||| |||||||||| || ||||| ||||||| |||||||||||| ||||||||| ||||||| |||||| | ||||| ||  ||||||
gtatcattacaacaatttatcattttttaattgattttatcagatttagtcctcggag-tgttgattgaagtttttgacatatgcccacttgttgtagttaaggtttttgtaacttagcttatggccttgaaataaatctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACCTGGCTGATGCCATGGCCAGGGCAAAGGTGTTTGACATCGATTTGCAGA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
tgggcagtactgaca-gacggtggtgc-taactggttgtaaatcctcaa-----acttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA
 || ||  | ||||| |  |        ||| |  |  |||||     |     ||||||     | ||   | |  || |   | || || |       | | ||||| ||||| || ||  |||||||||| || ||||| ||||| | | |||||||||||||||||||| |||||||||||||| | || || ||||||||||
-ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatt------tatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 2
tgggcagtactgacagac-ggtggtgctaactggttg---taaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggtttt-cagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA
     | | || |||  | |        || |  ||    ||| |   |  | |||      | ||    ||| |  ||     | | || |     || | ||||||||||| || ||  |||||||||| || ||||| ||||| | | |||||||||| ||||||||| |||||||||||||| | || || ||||||||||
--ataatttctaacatgctgaaaacataaaattcttaaattaactatacttagtttctgaaccatg---ccataattaaacacgagtcttaattaatttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCTGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
tgggcagtactgacagacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA
 |     || | ||  |   |  |   || |  ||| |  |    |||   || |  |  | | || ||       |  || |  |    |  |  ||||||||||||||| ||| |||| ||||| || |||||||||||   |||||||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||
-gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcatt-atttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31359455|gb|CD443812.1|CD443812
EST:     TCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGATATCAGCAGCATGAAC
genomic: TCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211175604|gb|FL003466.1|FL003466
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGAC
EST: gi|148946953|gb|EC892243.2|EC892243
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211357175|gb|FL003508.1|FL003508
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|148936903|gb|EC881052.2|EC881052
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211173928|gb|FL003454.1|FL003454
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|148953799|gb|EC899172.2|EC899172
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211359828|gb|FL003515.1|FL003515
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTNGTT-GGAGGCTGGGACATCAGCAGCATGAA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGT-GTTTGGAGGCTGGGACATCAGCAGCATGAA
EST: gi|31353868|gb|CD438225.1|CD438225
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGATATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211175610|gb|FL003472.1|FL003472
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCCTTGTGTTGGGAG-CTGGGACATCAGCAGCATGAA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACC-TTGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
EST: gi|32851119|gb|CD990800.1|CD990800
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GGGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|76021574|gb|DT948744.1|DT948744
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|149101031|gb|EE187129.2|EE187129
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|149073392|gb|EE161696.2|EE161696
EST:     GCTACCACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GGTGA-CCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagG-TGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
EST: gi|211175603|gb|FL003465.1|FL003465
EST:     GCTACCACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|149087787|gb|EE177103.2|EE177103
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|33098126|gb|CF058086.1|CF058086
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|76281435|gb|DV021003.1|DV021003
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|22521258|gb|BU080069.1|BU080069
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGATATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|50322698|gb|CO517824.1|CO517824
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211359822|gb|FL003509.1|FL003509
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAG
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAG
EST: gi|211359825|gb|FL003512.1|FL003512
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211359827|gb|FL003514.1|FL003514
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|6021328|gb|AW066256.1|AW066256
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGATATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211172253|gb|FL003442.1|FL003442
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211172252|gb|FL003441.1|FL003441
EST:     GCTACAACGGGGAGGA-ATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GNTGA-CCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagG-TGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
EST: gi|211362485|gb|FL003525.1|FL003525
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211172257|gb|FL003446.1|FL003446
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCA
EST: gi|149071428|gb|EE159822.2|EE159822
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|148941673|gb|EC886620.2|EC886620
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211362487|gb|FL003527.1|FL003527
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTG-TGTTTGGAGGCTGGGACATCAGCAGCATGAA
EST: gi|74245840|gb|DT653754.1|DT653754
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211359831|gb|FL003518.1|FL003518
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211362495|gb|FL003535.1|FL003535
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|6601698|gb|AW256094.1|AW256094
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGATATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|71434804|gb|DR815854.1|DR815854
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|71771142|gb|DR969079.1|DR969079
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211362491|gb|FL003531.1|FL003531
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|148952106|gb|EC897898.2|EC897898
EST:     GCT-CAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|32807109|gb|CD959343.1|CD959343
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGCGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|148936773|gb|EC880909.2|EC880909
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|71321477|gb|DR797439.1|DR797439
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211177286|gb|FL003482.1|FL003482
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211175602|gb|FL003464.1|FL003464
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211175614|gb|FL003476.1|FL003476
EST:     TACAACGGGGGAGGAGATATATGGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGGAA
genomic: TACAACGGGG-AGGAGATATATG-CGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATG-AA
EST: gi|149013856|gb|EE043338.2|EE043338
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211177287|gb|FL003483.1|FL003483
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|149079979|gb|EE168997.2|EE168997
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAAC
EST: gi|211357169|gb|FL003502.1|FL003502
EST:     GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATG                         GTGAACC-AGACGACCTTNGTGTTTGGAGGCTGGGACATCAGCAGCATGAA
genomic: GCTACAACGGGGAGGAGATATATGCGCCGTTCAAGAGCCTCCTACCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACCTT-GTGTTTGGAGGCTGGGACATCAGCAGCATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA
                                                ttttc  CT-rich tract
              ttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgggcagtactgacagacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG