1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttagtttagatctgtgctttttcacttttcatttccactcattacagtcctctatcttcttattcagcagttttttgaaccatgtttgatctactgcagCTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTGCCCAATACAAACAAG
species | Zea mays |
transcript | GRMZM2G004356_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCCCCACAGCATCGCGGAGAGG CTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTGEST: gi|26456061|gb|CA827644.1|CA827644
genomic: ACCCCCACAGCATCGCGGAGAGGgtaacaaagc ... tctactgcagCTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTG
EST: TGCGGGCGCGGCGTGGGCAGGCGACCGACCCCCACAGCATCGCGGAGAGG CTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTG
genomic: TGCGGGCGCGGCGTGGGCAGGCGACCGACCCCCACAGCATCGCGGAGAGGgtaacaaagc ... tctactgcagCTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTG
cagtcctctatcttcttattcagcagttttttgaaccatgtttgatctactgcagCTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTGCCCAATACAAACAAG
gtttgat putative branch site (score: 13)
ttttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagtttagatctgtgctttttcacttttcatttccactcattacagtcctctatcttcttattcagcagttttttgaaccatgtttgatctactgcagCTAAGAAGAGAGAGAATAGCAGAAAGGATGAGGGCCCTACAGGAATTGGTGCCCAATACAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - -tgtgctt
- - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - -ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttt