1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatatttactagcttgattcatagttttttattgtacaaggattgatatcatttggctgtccctggaaactcgctcatacttgatggttcttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCATCTGTTGTCAAGGCAAGTTTCTCAAAGATAGATTCATCTAACGATTCTG
species | Zea mays |
transcript | GRMZM2G002440_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCAEST: gi|50332490|gb|CO527616.1|CO527616
genomic: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
EST: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCAEST: gi|13237180|gb|BG355194.1|BG355194
genomic: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
EST: ATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCAEST: gi|50332491|gb|CO527617.1|CO527617
genomic: ATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
EST: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCAEST: gi|37394200|gb|CF634371.1|CF634371
genomic: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
EST: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCAEST: gi|67042408|gb|CO468663.1|CO468663
genomic: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
EST: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCAEST: gi|74234069|gb|DT641983.1|DT641983
genomic: TTGCCAGAACAAAGCGTGAGTCAGAGAACACCAAGAAGTATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
EST: AAGAAGTATGCCATACAG AGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
genomic: AAGAAGTATGCCATACAGgttcgcgcat ... ttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCA
atatcatttggctgtccctggaaactcgctcatacttgatggttcttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCATCTGTTGTCAAGGCAAGTTTCTCAAAGATAGATTCATCTAACGATTCTG
ttcttac putative branch site (score: 134)
ttcttac CT-rich tract
ttacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatttactagcttgattcatagttttttattgtacaaggattgatatcatttggctgtccctggaaactcgctcatacttgatggttcttacatacagAGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTGTCTCGGGCATCATCTGTTGTCAAGGCAAGTTTCTCAAAGATAGATTCATCTAACGATTCTG
- - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggt