1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatttgagtaaccttttttttggtcacttttcattgtgtttgtgttctgtttcttattaatatctgatggtacttatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGATTTCAATTCCAAAGGATTATGACACTGGTGTAAGCAAAGG
species | Zea mays |
transcript | GRMZM2G001850_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|211390614|gb|FL418023.1|FL418023
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: TCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACTCGGEST: gi|78076793|gb|DV505227.1|DV505227
genomic: TCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|71327897|gb|DR800580.1|DR800580
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|60355101|gb|DN222074.1|DN222074
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|78076792|gb|DV505226.1|DV505226
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|61118398|gb|DN559359.1|DN559359
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACTCGGEST: gi|32850141|gb|CD989822.1|CD989822
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|61118397|gb|DN559358.1|DN559358
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACTCGGEST: gi|211449697|gb|FL381429.1|FL381429
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: TCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACTCGGEST: gi|211039114|gb|FL370414.1|FL370414
genomic: TCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: CGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACTCGGEST: gi|60400636|gb|DN233443.1|DN233443
genomic: CGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGEST: gi|110480718|gb|EE010818.1|EE010818
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
EST: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG ATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
genomic: GCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAGgtaatttgag ... tatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGG
ttcattgtgtttgtgttctgtttcttattaatatctgatggtacttatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGATTTCAATTCCAAAGGATTATGACACTGGTGTAAGCAAAGG
cttattt CT-rich tract
tgtttcttattaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgagtaaccttttttttggtcacttttcattgtgtttgtgttctgtttcttattaatatctgatggtacttatttgccagATCCGCACCGCTCTTGAAGAGCATTTTGGATCATGTGGAGATATCACCCGGATTTCAATTCCAAAGGATTATGACACTGGTGTAAGCAAAGG
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