1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atagtagtagatcgagacgctccggccggtccatcatctatcatgcatggaccgcatcctgacggtgatccatggcgtgtgcgtgtgcgtcgacttgcagAACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAGCTGCGCGCGGAGAACATGCGGTACAAGGAGGCCCTCAGCAGCGCGTCCT
species | Zea mays |
transcript | GRMZM2G001289_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCCCTCCAGGTCAAGTTCTGGTTCCAGAAACA-GCGCACGCAAATGAAG AAACAGCACGAGCGGCAGGAGEST: gi|71449408|gb|DR830458.1|DR830458
genomic: ACCCCTCCAGGTCAAGTTCTGGTTCCAGAA-CAAGCGCACGCAAATGAAGgtgacgatcc ... cgacttgcagAACCAGCACGAGCGGCAGGAG
EST: TACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAG AACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAG
genomic: TACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgacgatcc ... cgacttgcagAACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAG
catggaccgcatcctgacggtgatccatggcgtgtgcgtgtgcgtcgacttgcagAACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAGCTGCGCGCGGAGAACATGCGGTACAAGGAGGCCCTCAGCAGCGCGTCCT
tcctgac putative branch site (score: 57)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtagtagatcgagacgctccggccggtccatcatctatcatgcatggaccgcatcctgacggtgatccatggcgtgtgcgtgtgcgtcgacttgcagAACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAGCTGCGCGCGGAGAACATGCGGTACAAGGAGGCCCTCAGCAGCGCGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - gctccgg
- - - - - - - - - - - - - - gtccatc
- - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - -ccgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcgtg