1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aggctgcagagtcggacaccccactcctctcttccacctctgtccgatcttgccgcctcttggagagaaaagacctttaattccatttgtatgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATGGCCAATGAGTCATCTACAGCAGCCATACAGT
species | Zea mays |
transcript | GRMZM2G000842_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGA CAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATEST: gi|71435856|gb|DR816906.1|DR816906
genomic: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGAgtaagattgc ... atgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCAT
EST: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGA CAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATEST: gi|71439738|gb|DR820788.1|DR820788
genomic: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGAgtaagattgc ... atgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCAT
EST: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGA CAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATEST: gi|76015224|gb|DT942394.1|DT942394
genomic: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGAgtaagattgc ... atgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCAT
EST: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGA CAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCAT
genomic: ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGAgtaagattgc ... atgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCAT
gatcttgccgcctcttggagagaaaagacctttaattccatttgtatgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATGGCCAATGAGTCATCTACAGCAGCCATACAGT
ctttaat putative branch site (score: 4)
tttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctgcagagtcggacaccccactcctctcttccacctctgtccgatcttgccgcctcttggagagaaaagacctttaattccatttgtatgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATGGCCAATGAGTCATCTACAGCAGCCATACAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC