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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgactcttaggtcctcacaaactaaattgtgtttaactgtactctgcgatcctgaatgtttcttatgctgtagGTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTTGTTTCTCCAACTCTAATAATTATCGGGAAAGTGGTATCCTTGTCACCAT

Basic information

species Zea mays
transcript GRMZM2G000739_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000739_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g44050.1 (Oryza sativa), 3'ss of exon 5
gtagtgactcttaggtcctcacaaactaaattgtgtttaactgtactctgcgatcctgaatgtttcttatgctgtagGTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTTGTTTCTCCAACTCTAATAATTATCGGGAAAGTGGTATCCTTGTCACCAT
||| |||   || | ||||||| |  |||||||||| |  ||  | | | |  | |||||  |||||| || ||||||| || ||  ||||||||||| ||||| ||||||||||||| |  ||||| || ||||| ||||| |||||||| ||||| |||||  | |||||||| |
gtactgagcatt-gatcctcaccatttaaattgtgtgtggcttcagttttctgtgctgaacatttcttttgttgtagGTATTCGCCATGTTAAAGGATTTTGTGAATGAAGTCAAGTCGGAGGATCTAGTCTCTCCTACTCTGATAATTATTGGGAAGGTGGTGGCATTGTCACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60350142|gb|DN217115.1|DN217115
EST:     ACCTCAACAACGAATG                         GTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTT
genomic: ACCTCAACAACGAATGgtagtgactc ... tatgctgtagGTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTT
EST: gi|78090156|gb|DV518530.1|DV518530
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCTCAACAACGAATG                         GTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTT
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCTCAACAACGAATGgtagtgactc ... tatgctgtagGTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactaaattgtgtttaactgtactctgcgatcctgaatgtttcttatgctgtagGTGTTTGCGTTGTTAAAGGATCTTGTGGATGAAGTCAAGTCAGCTGATCTTGTTTCTCCAACTCTAATAATTATCGGGAAAGTGGTATCCTTGTCACCAT
                                      tgtttctt  CT-rich tract
                                        tttcttat  TA-rich tract