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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtacttttttcccttcacgtttgtcttctggtatttgccattttcagacacaggtataattctgtttcttgtgtgatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC

Basic information

species Zea mays
transcript GRMZM2G000718_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211216370|gb|FL354222.1|FL354222
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|28361821|gb|CB240177.1|CB240177
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211142613|gb|FL363442.1|FL363442
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211028706|gb|FL343658.1|FL343658
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211108631|gb|FL325828.1|FL325828
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|149002889|gb|EE038886.2|EE038886
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211049854|gb|FL341783.1|FL341783
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGANCTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|148941490|gb|EC886419.2|EC886419
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211276380|gb|FL349488.1|FL349488
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACGTA
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACGTA
EST: gi|21843414|gb|BQ703995.1|BQ703995
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTAACCTTGAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211224799|gb|FL342363.1|FL342363
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGA
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGA
EST: gi|37420501|gb|CF647941.1|CF647941
EST:     GTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: GTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211541608|gb|FL367257.1|FL367257
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|33466594|gb|CF243643.1|CF243643
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|71327359|gb|DR800293.1|DR800293
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211440064|gb|FL316511.1|FL316511
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211116685|gb|FL364784.1|FL364784
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAA
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAA
EST: gi|148993116|gb|EE033716.2|EE033716
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211164059|gb|FL355972.1|FL355972
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTGAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|149112851|gb|EE295664.2|EE295664
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|149009782|gb|EE041679.2|EE041679
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|78117925|gb|DV536312.1|DV536312
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211067349|gb|FL342683.1|FL342683
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211037667|gb|FL309759.1|FL309759
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|149089650|gb|EE178904.2|EE178904
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|78083753|gb|DV512146.1|DV512146
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211285641|gb|FL366666.1|FL366666
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211510365|gb|FL349271.1|FL349271
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAA-C
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211162036|gb|FL334323.1|FL334323
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211100818|gb|FL317193.1|FL317193
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTGAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211264789|gb|FL317771.1|FL317771
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAA
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAA
EST: gi|211103512|gb|FL329043.1|FL329043
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGG
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGG
EST: gi|91869534|gb|EB400432.1|EB400432
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211125915|gb|FL330703.1|FL330703
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGG-AAAAC
EST: gi|30088413|gb|CB886618.1|CB886618
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211512069|gb|FL314329.1|FL314329
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTA-GGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|28361634|gb|CB239990.1|CB239990
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211262335|gb|FL317743.1|FL317743
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211314807|gb|FL364565.1|FL364565
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211411458|gb|FL312810.1|FL312810
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|149074291|gb|EE162669.2|EE162669
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211529407|gb|FL360248.1|FL360248
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGA
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGA
EST: gi|50333644|gb|CO528770.1|CO528770
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211190651|gb|FL327243.1|FL327243
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|26456321|gb|CA827904.1|CA827904
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTAACCTTGAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211477883|gb|FL341268.1|FL341268
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|20301313|gb|BQ164256.1|BQ164256
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTAACCTTGAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: gi|211018150|gb|FL327162.1|FL327162
EST:     AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG                         ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 243

CTTGATCAAAGAGTTTGACCGTATACTCAAGGATGAGGAGAAAAAGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC


Block sizes: 48 (upstream exon), 38 (downstream exon)
Score: 165

CTTGATCAAAGAGTTTGACCGTATACTCAAGGATGAGGAGAAAAAGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 77

CTTGATCAAAGAGTTTGACCGTATACTCAAGGATGAGGAGAAAAAGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 169

CTTGATCAAAGAGTTTGACCGTATACTCAAGGATGAGGAGAAAAAGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatttgccattttcagacacaggtataattctgtttcttgtgtgatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
                         tataattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggtacttttttcccttcacgtttgtcttctggtatttgccattttcagacacaggtataattctgtttcttgtgtgatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA