Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctagggactaaaatttagcacgtgccgcattggatgttaaatacctattacgagtaatataatctgattacaaaactaagaaactctattctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACT

Basic information

species Zea mays
transcript GRMZM2G000510_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000510_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g48040.1 (Oryza sativa), 3'ss of exon 3
tctagggactaaaatttagcacgtgccgcattggatgttaaatacctattacgagtaatataatctgattacaaaactaagaaactctattctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACT--
                  | ||    |  | |     ||   | ||  |  | | || ||        | ||     ||       ||  |    ||   ||||||||| || ||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||| || |  || ||||| ||  ||  
------------------gtactctaccaactctgctttgcttcccattcccaactagtac-------tcactccgttatatgctgcttcttctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCTTCAGGCGGAGGGCAAGCTGGCGCCCGGCGCCCCGCGCCGATATGCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227505|gb|FL377297.1|FL377297
EST:     CATGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|211415548|gb|FL372632.1|FL372632
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCGTCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|149014447|gb|EE044057.2|EE044057
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|71332543|gb|DR803241.1|DR803241
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|78179369|gb|DV549742.1|DV549742
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|93281478|gb|EB673742.1|EB673742
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|89249688|gb|DY621474.1|DY621474
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|31349105|gb|CD433462.1|CD433462
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|71447490|gb|DR828540.1|DR828540
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|211234204|gb|FK951232.1|FK951232
EST:     CATGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|149072257|gb|EE160513.2|EE160513
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|6827024|gb|AW330667.1|AW330667
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|148947408|gb|EC892822.2|EC892822
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|93015136|gb|EB640656.1|EB640656
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|211234205|gb|FK951233.1|FK951233
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTTACTGACCTTGTCAAGGTC
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCT-ACTGACCTTGTCAAGGTC
EST: gi|211253778|gb|FL369138.1|FL369138
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|31363588|gb|CD447945.1|CD447945
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|76292715|gb|DV032283.1|DV032283
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|71437391|gb|DR818441.1|DR818441
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|12045964|gb|BF727999.1|BF727999
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|67028232|gb|CO456981.1|CO456981
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|211285989|gb|FL388300.1|FL388300
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|78109062|gb|DV527479.1|DV527479
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|50333857|gb|CO528983.1|CO528983
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|211209142|gb|FL374139.1|FL374139
EST:     CCACGTTNGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGTTCACAAC                         TGGTGCYATCGCTATCAGCATCGCCAACCCTACT
genomic: CCACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACT
EST: gi|76291091|gb|DV030659.1|DV030659
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGC-TCACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|148931428|gb|EC874386.2|EC874386
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|148954532|gb|EC899968.2|EC899968
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|78108615|gb|DV527033.1|DV527033
EST:     CAAGTTGGGGATGTCCCTTTGTCCAA-AAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTC
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTC
EST: gi|76911479|gb|DV164289.1|DV164289
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|88751922|gb|DY536063.1|DY536063
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|148986615|gb|EE030385.2|EE030385
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCCTCGCTATCAACATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: -ACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|76294190|gb|DV033758.1|DV033758
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|148932353|gb|EC875981.2|EC875981
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|76281516|gb|DV021084.1|DV021084
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|22545542|gb|BU097901.1|BU097901
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|149110174|gb|EE293989.2|EE293989
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|71303282|gb|DR787744.1|DR787744
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|71437614|gb|DR818664.1|DR818664
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|50324459|gb|CO519585.1|CO519585
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|31348998|gb|CD433355.1|CD433355
EST:     CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTTCACAAC                         TGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: CACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAACgaatcaagct ... tctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattacgagtaatataatctgattacaaaactaagaaactctattctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACT
                 atctgat  putative branch site (score: 4)
                                       ctctattct  putative PPT
          taatataatctgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctagggactaaaatttagcacgtgccgcattggatgttaaatacctattacgagtaatataatctgattacaaaactaagaaactctattctgaattgaAGGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - gtgccgc
- - - - - - - - - - - - - - - ttggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa