1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttttaaaggcaaggctaggacgactctttttatgcaattttacgtcctgtttactgtggcacgcaaaataactgaggctgtttgttttgtttcttcagGAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTGCTTGTGACACTTGGTTTTGATTTGAATGTGAACCATCCTTACAAGCCCT
species | Zea mays |
transcript | AC233979.1_FGT009 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACAGAAG GAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTGEST: gi|32799767|gb|CD952003.1|CD952003
genomic: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACAGAAGgtgatttgat ... gtttcttcagGAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTG
EST: GATCCCGCTGCAGTTCAACGAATAAAACAGAAG GAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTGEST: gi|32800288|gb|CD952524.1|CD952524
genomic: GATCCTGCTGCAGTTCAACGAATAAAACAGAAGgtgatttgat ... gtttcttcagGAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTG
EST: GATCCTGCTGCAGTTCAACGAATAAAACAGAAG GAAGTATATGAACAACAAAAGGAACTTATTTTA
genomic: GATCCTGCTGCAGTTCAACGAATAAAACAGAAGgtgatttgat ... gtttcttcagGAAGTATATGAACAACAAAAGGAACTTATTTTA
gtcctgtttactgtggcacgcaaaataactgaggctgtttgttttgtttcttcagGAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTGCTTGTGACACTTGGTTTTGATTTGAATGTGAACCATCCTTACAAGCCCT
aaataac putative branch site (score: 148)
tttgttttgtttcttc putative PPT
aaaataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttaaaggcaaggctaggacgactctttttatgcaattttacgtcctgtttactgtggcacgcaaaataactgaggctgtttgttttgtttcttcagGAAGTATATGAACAACAAAAGGAACTTATTTTACTCGGGGAACGTGTTGTGCTTGTGACACTTGGTTTTGATTTGAATGTGAACCATCCTTACAAGCCCT
- - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt