1 5' 3' | 2 5' 3' | 3 5' 3' |
...agatgaatgatggcgatcccttgtccttgcagctgaatcttattactcgaaagaatcctttgtgttgtgtcatttgctaaagtcctgtatgatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
species | Zea mays |
transcript | AC230013.2_FGT007 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|5932717|gb|AW057078.1|AW057078
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|15100313|gb|BI396104.1|BI396104
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|211263956|gb|FL049653.1|FL049653
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTATGGCATCTGGCTGCGCEST: gi|18384240|gb|BM417439.1|BM417439
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|211268823|gb|FL049675.1|FL049675
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTATGGCATCTGGCTGCGCEST: gi|29130285|gb|CB380989.1|CB380989
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|5343072|gb|AI795482.1|AI795482
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|31405721|gb|CD484453.1|CD484453
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|211261521|gb|FL049637.1|FL049637
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTATGGCATCTGGCTGCGCEST: gi|29544754|gb|CB605362.1|CB605362
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|211261516|gb|FL049632.1|FL049632
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTATGGCATCTGGCTGCGCEST: gi|9794359|gb|BE552667.1|BE552667
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|5398753|gb|AI812218.1|AI812218
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|211259082|gb|FL049626.1|FL049626
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|89757074|gb|DY686828.1|DY686828
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|18383730|gb|BM416930.1|BM416930
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|31358983|gb|CD443340.1|CD443340
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|20301341|gb|BQ164284.1|BQ164284
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAATAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|15313528|gb|BI478745.1|BI478745
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|211268834|gb|FL049686.1|FL049686
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTATGGCATCTGGCTGCGCEST: gi|211263947|gb|FL049644.1|FL049644
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|29130286|gb|CB380990.1|CB380990
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|87153228|gb|DY398017.1|DY398017
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|22542281|gb|BU092719.1|BU092719
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCEST: gi|18649600|gb|BM498419.1|BM498419
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
EST: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG ATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctct ... gatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGC
ctcgaaagaatcctttgtgttgtgtcatttgctaaagtcctgtatgatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
tgctaaa putative branch site (score: 397)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgaatgatggcgatcccttgtccttgcagctgaatcttattactcgaaagaatcctttgtgttgtgtcatttgctaaagtcctgtatgatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- atgaatg
- - - - - - - - - - - - - - gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtat