1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaacgataaatttgttgacattcaagttttgaattttagttcttatttgtccaatccttgtgtagGAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAGCAGATATCTGAATTGAAAAAGGAGATTCATAGAACTAGGGATGAACAGC
species | Zea mays |
transcript | AC217665.3_FGT005 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAAAATGGAGGATAACCATTTTCAGATCAAATGTTCACTAGCATCAAG GAGGTGCATGATAGAGEST: gi|32908364|gb|CF013177.1|CF013177
genomic: CAAAAAATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAGgtaaacgata ... ccttgtgtagGAGGTGCATGATAGAG
EST: CAAAAAATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAG GAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAGEST: gi|211304180|gb|FL452361.1|FL452361
genomic: CAAAAAATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAGgtaaacgata ... ccttgtgtagGAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAG
EST: CAAAAAATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAG GAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAGEST: gi|211369627|gb|FL200023.1|FL200023
genomic: CAAAAAATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAGgtaaacgata ... ccttgtgtagGAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAG
EST: CAAAADATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAG GAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAG
genomic: CAAAAAATGGAGGAAAACCATTTTCAGATCAAATGTTCACTAGCATCAAGgtaaacgata ... ccttgtgtagGAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAG
tttgttgacattcaagttttgaattttagttcttatttgtccaatccttgtgtagGAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAGCAGATATCTGAATTGAAAAAGGAGATTCATAGAACTAGGGATGAACAGC
tgttgac putative branch site (score: 191)
tccttgt putative PPT
ttttgaattttagttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacgataaatttgttgacattcaagttttgaattttagttcttatttgtccaatccttgtgtagGAGGTGCATGATAGAGAAAAAGAGGTGCATACCTCGGGATATTCAGATGAGCAGATATCTGAATTGAAAAAGGAGATTCATAGAACTAGGGATGAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT