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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccattcatgcgtctagacacgatgttccccatataacaactgtcttgctaggattggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG

Basic information

species Zea mays
transcript AC217358.3_FGT005
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC217358.3_FGT005 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g60000.1 (Oryza sativa), 3'ss of exon 3
-----------------------------gtaccattcatgcgtcta-gacacgatgttccccatataacaactgtcttgctagga--------ttggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG
                              || |    |||  || | |  | | | | |    | ||| | ||    |  |||||        ||    |  | ||   || | ||   | | ||   | |       ||| |  ||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
gtactgtcatcatatctatctgtgtttaaatatctaatatgtttccatggtatgctatgcta-gtttaagagctaatatagtaggatatttagtttaagagttaatatagtaggatatatgctaataattactcctttatccaacacagGCTGTGAGCAGGGAGATTAGGAAGATCCTGACAGAGAGGGCTAGCAACTTCAACATTGCTCTGGATGATGTGTCCATCACAAGTCTCAGCTTTGGAAAAG

upper sequence: AC217358.3_FGT005 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g62490.1 (Oryza sativa), 3'ss of exon 3
-------------------------------gtaccattcatgcgtcta-gacacgatgttccccatataacaactgtcttgctaggattggatg-agattagga-----tatgttaaca-gttcattcatg--cattcgat--tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG
                                || |    |||  || | |  | | | | |    | ||| | ||    |  ||| ||   ||  || ||| ||     |||  ||  |  |    | ||    ||||  |  ||| |  ||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
gtactgtcttatcatatctatctgtgtttaaatatctaatatgtttccatggtatgctatgcta-gtttaagagctaatatagtagtatgatatttagtttaagagctaatatagtaggatatatggtaataattattcctttatccaacacagGCTGTGAGCAGGGAGATTAGGAAGATCCTGACAGAGAGGGCTAGCAACTTCAACATTGCTCTGGATGATGTGTCCATCACAAGTCTCAGCTTTGGAAAAG

upper sequence: AC217358.3_FGT005 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G36940.1 (Glycine max), 3'ss of exon 4
gtaccattcatgcgtctagacacgatgttccccatataacaactgtc--ttgctaggattggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG
         ||  || |  |  | |||||  |  |||  | | | |   || |||| |     |    || |  |    | | |  |    | ||   |  ||     || ||||||| ||  |||| ||  |||||||||||||||| |||||    |||||||||||||| || ||||||||||| || || || || |  ||||| || |
---------attagt-tccatgcaatgttttct-tatttcgagtattcatttctagcacacagtagagtttgtttgaacttaaacatttaacttgaccttaatctt--tgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTGACTGAAAGGGCTGCTAACTTCAATATTGCCCTTGATGATGTGTCAATTACTAGTCTGACTTTTGGCAAGG

upper sequence: AC217358.3_FGT005 (Zea mays), 3'ss of exon 3
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 3'ss of exon 5
gtaccattcatgcgtctagacacgatgttccccatataacaac-tgtcttgctaggattg-gatgagatta-ggatatgttaacagttcattcatgcattcgattccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG
              | |   || | | |      | |   |   |   ||| |||||||  ||| | |||    |||| | ||    | |   || |||  |  | |  |  || |||| || ||||| ||  | ||| |  |||| || |||||   ||| ||||| ||||||||||||||||||||||| |||||||| |  ||||| |  |
------------tattttagcatggtataataattgtggaaggataggttgttaggattacgataaaattttaaatatatcaagttctgagcaatccatatg--ttctttatagACTGTTAGTAGGGAAATACGTAAGTTATTGACAGAAAGGGCAGCCAATTTCAACATTGCTCTGGATGATGTGTCCATTACAAGCCTTACTTTTGGGAGGG

upper sequence: AC217358.3_FGT005 (Zea mays), 3'ss of exon 3
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 3'ss of exon 5
gtaccattcatgcgtctagacacgatgt--tccccatataacaactgtcttgctaggattggatgagattaggatatgttaacagttcattcatgcattcgat-tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG
              | |   |  | |||  |  |  |  || ||  |  ||| ||||||| ||| | |  |   ||  |||     |  |       ||  || | |  |  ||||||| |||||||| ||  | |||||  |||| || |||||   ||| ||||| || ||||||||||||||||||||||||||||| |  ||||| || |
------------tattttagcttggtgtaataactgtggaagaatagg-ttgttaggattagataaaaa-attttaaattactgagttctgagcaatttgtatgttctttatagGCTGTTAGCAGGGAAATACGTAAGATATTGACAGAAAGGGCAGCCAATTTCAACATCGCTCTGGATGATGTGTCCATCACAAGCCTTACTTTTGGGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5005748|gb|AI711810.1|AI711810
EST:     GCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: GCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|149110344|gb|EE190366.2|EE190366
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCA-CAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|9733307|gb|BE512059.1|BE512059
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|149076703|gb|EE165347.2|EE165347
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|33092429|gb|CF052423.1|CF052423
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|15215048|gb|BI431144.1|BI431144
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGA
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGA
EST: gi|78081933|gb|DV510345.1|DV510345
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|148982739|gb|EE028558.2|EE028558
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|71308360|gb|DR790410.1|DR790410
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|149112958|gb|EE295743.2|EE295743
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|6021034|gb|AW065962.1|AW065962
EST:     AAGCTGTGGGTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|6021466|gb|AW066394.1|AW066394
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|211504562|gb|FK951749.1|FK951749
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTKATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|78084473|gb|DV512866.1|DV512866
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|19437062|gb|BM953472.1|BM953472
EST:     AAGCTGTTGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|31355780|gb|CD440137.1|CD440137
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|20507570|gb|BQ279689.1|BQ279689
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|60398117|gb|DN230933.1|DN230933
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|211504558|gb|FK951745.1|FK951745
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|148987626|gb|EE031500.2|EE031500
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|211504555|gb|FK951742.1|FK951742
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGNAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTT
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGG-AGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTT
EST: gi|76011854|gb|DT939024.1|DT939024
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|22715353|gb|BU197718.1|BU197718
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGG
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGG
EST: gi|78079465|gb|DV507877.1|DV507877
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|211504561|gb|FK951748.1|FK951748
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|31664014|gb|CD573194.1|CD573194
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|37418141|gb|CF646734.1|CF646734
EST:     AAGCTGTGGTTGCTCAATATAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|31356533|gb|CD440890.1|CD440890
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|6536621|gb|AW224934.1|AW224934
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: gi|74243143|gb|DT651057.1|DT651057
EST:     AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG                         GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 455

GGAGAACTTCAATGAGAGAGTTCTGCCTTCAATCATTCATGAAACACTCAAAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 126

GGAGAACTTCAATGAGAGAGTTCTGCCTTCAATCATTCATGAAACACTCAAAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 162

GGAGAACTTCAATGAGAGAGTTCTGCCTTCAATCATTCATGAAACACTCAAAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 306

GGAGAACTTCAATGAGAGAGTTCTGCCTTCAATCATTCATGAAACACTCAAAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG
                  tgttaac  putative branch site (score: 306)
               atatgttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccattcatgcgtctagacacgatgttccccatataacaactgtcttgctaggattggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCAATATTGCTCTGGATGATGTGTCCATCACAAGCCTCAGCTTTGGAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT