1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taccgagaaataaaaagtaactatgttatgctatcaactactgttgacattctacatattctatttgtactaatcttggctattatggcttcgcaaacagGTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACTTTCATGGAGTCATGTAAATCAAATTCTGGCAATCATGAAGTCCAGTATG
species | Zea mays |
transcript | AC217358.3_FGT003 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAGCGCATTCTG GTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACTEST: gi|78107175|gb|DV525593.1|DV525593
genomic: GTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAGCGCATTCTGgtaggcccca ... tcgcaaacagGTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACT
EST: GTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAGCGCATTCTG GTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACTEST: gi|71435646|gb|DR816696.1|DR816696
genomic: GTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAGCGCATTCTGgtaggcccca ... tcgcaaacagGTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACT
EST: GTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAGCGCATTCTG GTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACT
genomic: GTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAGCGCATTCTGgtaggcccca ... tcgcaaacagGTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACT
gacattctacatattctatttgtactaatcttggctattatggcttcgcaaacagGTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACTTTCATGGAGTCATGTAAATCAAATTCTGGCAATCATGAAGTCCAGTATG
tactaat putative branch site (score: 46)
tacatattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccgagaaataaaaagtaactatgttatgctatcaactactgttgacattctacatattctatttgtactaatcttggctattatggcttcgcaaacagGTTTTATATGGACTAGAGTACGCATATGCATTGGATGACCTTAGACAGACTTTCATGGAGTCATGTAAATCAAATTCTGGCAATCATGAAGTCCAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -aaataaa
- - - - - - - - - - - - -ttatgct
- - - - - - - - - - - - - - - - - - - - ctgttga