1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attatttattgctggagttcttggtctattttctctgaaagaaataaagaatcccaataactctgctaagcagcttattgatttcttaactttgttacagGACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGAAAATGACAGAAGATGTTCTTGCTGTCTCGATCAGTCCCGAAGGAAAGCACATTGCTGTTG
species | Zea mays |
transcript | AC209858.4_FGT002 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCATGATGTCAAGTTCTGGGAATACCAATTGGTGCAGAAGTCTGATAAC GACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGAAAATGACAGAAEST: gi|67013994|gb|CO442743.1|CO442743
genomic: ATCATGATGTCAAGTTCTGGGAATACCAATTGGTGCAGAAGTCTGATAACgtgagcctct ... tttgttacagGACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGAAAATGACAGAA
EST: ATCATGATGTCAAGTTCTGGGAATACCAATTGGTGCAGAAGTCTGATAAC GACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGCAAATGACAGAA
genomic: ATCATGATGTCAAGTTCTGGGAATACCAATTGGTGCAGAAGTCTGATAACgtgagcctct ... tttgttacagGACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGAAAATGACAGAA
aaagaatcccaataactctgctaagcagcttattgatttcttaactttgttacagGACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGAAAATGACAGAAGATGTTCTTGCTGTCTCGATCAGTCCCGAAGGAAAGCACATTGCTGTTG
tcttaac putative branch site (score: 67)
ctttgtt CT-rich tract
ttattgatttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatttattgctggagttcttggtctattttctctgaaagaaataaagaatcccaataactctgctaagcagcttattgatttcttaactttgttacagGACTCTAAGCAGCTGACTGTAACTAATGTGAGGACCTTGAAAATGACAGAAGATGTTCTTGCTGTCTCGATCAGTCCCGAAGGAAAGCACATTGCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - -attgctg
- - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctt