1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatggtgtcttgtacatgtttgcacaatattgaaaactaggcctgtttggtttcttgcctaagacaccacaacttgcctaagctagtgactaagcttagacaagttgtgaccatcatgcctcatgctgtactttctcttttaacattattatttcatttcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTATGGATCTGAAACT
species | Zea mays |
transcript | AC209208.3_FGT001 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAG GAAATATCACTTCTGAGCCGACTGCAACACCCAAACATTGTGCGATACTATEST: gi|32838212|gb|CD977890.1|CD977890
genomic: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAGgtatggtgtc ... catttcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTAT
EST: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAG GAAATATCACTTCTGAGCCGACTGCAACACCCAAACATTGTGCGATACTATEST: gi|91877716|gb|EB407673.1|EB407673
genomic: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAGgtatggtgtc ... catttcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTAT
EST: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAG GAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTAT
genomic: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAGgtatggtgtc ... catttcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTAT
accatcatgcctcatgctgtactttctcttttaacattattatttcatttcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTATGGATCTGAAACT
ttttaac putative branch site (score: 11)
tttcatttc putative PPT
tttctcttttaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgtcttgtacatgtttgcacaatattgaaaactaggcctgtttggtttcttgcctaagacaccacaacttgcctaagctagtgactaagcttagacaagttgtgaccatcatgcctcatgctgtactttctcttttaacattattatttcatttcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTATGGATCTGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG