1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaagtttatcctcatgggttccccccctctttttggtgcttattacttcaggagtcataacaatgtatattctgttttcatttcatgaaaccttcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCATACATTCTATGGTGTTGCTGGAACGCAG
species | Zea mays |
transcript | AC208327.4_FGT003 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TCTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|9732023|gb|BE510775.1|BE510775
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|78089597|gb|DV517971.1|DV517971
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|211516191|gb|FL166755.1|FL166755
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|33467487|gb|CF244536.1|CF244536
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|148933097|gb|EC876730.2|EC876730
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|211466442|gb|FL172133.1|FL172133
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|19822069|gb|BQ048093.1|BQ048093
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCAEST: gi|211516190|gb|FL166754.1|FL166754
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGGACTCGTCCGTTCAGAGTTCCCTCEST: gi|26457087|gb|CA828670.1|CA828670
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGG-ACTCGTCCGTTCAGAGTTCCCTC
EST: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAG TTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
genomic: CAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagttta ... tcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCA
caggagtcataacaatgtatattctgttttcatttcatgaaaccttcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCATACATTCTATGGTGTTGCTGGAACGCAG
tcataac putative branch site (score: 104)
ccttcctttgc putative PPT
ataacaatgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtttatcctcatgggttccccccctctttttggtgcttattacttcaggagtcataacaatgtatattctgttttcatttcatgaaaccttcctttgcagTTTTGATGTTGTGCGTGATCAACTTGGACTCGTCCGTTCAGAGTTCCCTCATACATTCTATGGTGTTGCTGGAACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA