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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatttggtactgtggtgtcctttattcaagtttgtttttaggtgatcatgctcttaaaacatgtctgataatgacatttctatctgtagTCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG

Basic information

species Zea mays
transcript AC205703.4_FGT004
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 11
gtgtgatttggtactgtggtgtcctttattcaagtt-tgtttttaggtgatca--------tgctcttaaaacatgt--ctgataatgacatttctatctgtagTCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG
      | || ||||  ||   |  | ||||||||| | |||| ||||| |||        ||||||| ||| |  |  || | ||| |  ||| | ||| ||||||||| | |||||||||||||| ||||| ||||| || |||| |||||| ||||||||||||||||||||||| |||
-----gtgtgatactccggcaac--tcattcaagttcttttttcaggtgttcatgcatgtctgctcttgaaataccttgctaacaatcatcttttt-tctctagTCAAATGTTGCAAAGTTTGAGGGGCATGTTGGACCAGTGACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTTGCG

upper sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 3
lower sequence: AT2G33340.1 (Arabidopsis thaliana), 3'ss of exon 13
---------gtgtgatttggtactgtggtgtcctttattcaagtttgtttttaggtgatcatgctcttaaaacatgtctgataatgacatttctatctgtagTCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG
          || | ||    ||| |  || ||  |||| || ||  |  ||  || |   || |||| |   ||   |   | |    |   |     ||| ||||| | || |||||||| || ||    ||    || || | ||| |||||||||||||||||||||||||| |||
gtaaaaactatgggcttccaaactata-tgacc--tattaaaattattaattgtgt-acagtgttcttcat-tatagttttcatttttttggttgataatagGCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaggtgatcatgctcttaaaacatgtctgataatgacatttctatctgtagTCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG
                            gtctgat  putative branch site (score: 4)
                                          tttctatct  putative PPT
                   ttaaaacat  TA-rich tract