1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatttgctcccttattcattgaaacaaaattgttgacaattcaatagcatgttatcagagtgcttatgtttcactaaccttctgtttgctttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATGGACACTGCCGCAACAGAGCTCGAATGCTTCCAAGAGCTGCAGAAACAGG
species | Zea mays |
transcript | AC203535.4_FGT001 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAG ATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATGEST: gi|26559247|gb|CA831482.1|CA831482
genomic: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAGgtaaacttgg ... tttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATG
EST: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAG ATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATGEST: gi|211209236|gb|FL379058.1|FL379058
genomic: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAGgtaaacttgg ... tttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATG
EST: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAG ATACGGGCTGGAAAACTGEST: gi|32934502|gb|CF039314.1|CF039314
genomic: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAGgtaaacttgg ... tttttattagATACGGGCTGGAAAACTG
EST: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAG ATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATGEST: gi|32931520|gb|CF036332.1|CF036332
genomic: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAGgtaaacttgg ... tttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATG
EST: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAG ATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATG
genomic: AGGCTTCTCGGCTTGAGCAGAAGATTAAGCTTCTGACACAAGGATATCAGgtaaacttgg ... tttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATG
tagcatgttatcagagtgcttatgtttcactaaccttctgtttgctttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATGGACACTGCCGCAACAGAGCTCGAATGCTTCCAAGAGCTGCAGAAACAGG
cactaac putative branch site (score: 156)
ccttctgtttgctttt CT-rich tract
tttgctttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttgctcccttattcattgaaacaaaattgttgacaattcaatagcatgttatcagagtgcttatgtttcactaaccttctgtttgctttttattagATACGGGCTGGAAAACTGTGGTCACAGGTCCAAGATACATTCAAGCAGATGGACACTGCCGCAACAGAGCTCGAATGCTTCCAAGAGCTGCAGAAACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -tgctccc
- - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca