1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttatacaacactacttgtctcacagtaatgcttctgcaatctactaaggtccactatactctgaagggatgagctgatgatgtgtttcctcttcccagACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTGAGCAAAACTGCGCCAATTCAGGCACTTTCACTCATTATACTGGGCCCCT
species | Zea mays |
transcript | AC194970.5_FGT005 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATC ACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTGEST: gi|78087132|gb|DV515525.1|DV515525
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATCgtgagctctt ... ctcttcccagACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATC ACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTG
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATCgtgagctctt ... ctcttcccagACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTG
ctaaggtccactatactctgaagggatgagctgatgatgtgtttcctcttcccagACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTGAGCAAAACTGCGCCAATTCAGGCACTTTCACTCATTATACTGGGCCCCT
agctgat putative branch site (score: 225)
tgtgtttcctcttccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttatacaacactacttgtctcacagtaatgcttctgcaatctactaaggtccactatactctgaagggatgagctgatgatgtgtttcctcttcccagACAATTGGCTCCTTTCAGAAGAAGTACAACATTGGATCATTTGAGCTGCTGAGCAAAACTGCGCCAATTCAGGCACTTTCACTCATTATACTGGGCCCCT
- - -tacaaca
- - - - - - ctacttg
- - - - - - - - - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt