1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatagaacaactgagtaggaaacatgcatcaactaattaacatttgttgatagtattgaagtcttaagtggagcataaatgactcttctttcctttgtagGTGCGGTGCTCAACAAGGTGGGGATTTGGGAAGTTCAAACCAAGCCCTTGACGGAATTCTTGGTTTTGGTGAGGCAAATACATCAATGCTATCACAACTA
species | Zea mays |
transcript | AC190609.3_FGT004 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGACTAGGGATGGGCAGACACAGCCGGCTAATGCCAGCGTCATTTTCGG GTGCGGTGCNTCA-CAAGGTGGGGATEST: gi|91874605|gb|EB404562.1|EB404562
genomic: GTGACTAGGGATGGGCAGACACAGCCGGCTAATGCCAGCGTCATTTTCGGgtgagtttgg ... tcctttgtagGTGCGGTGC-TCAACAAGGTGGGGAT
EST: GTGACTAGGGATGGGCAGACACAGCCGGCTAATGCCAGCGTCATTTTCGG GTGCGGTGCTCAACAAGGTGGGGATTTGGGGAGTTCAAEST: gi|31360897|gb|CD445254.1|CD445254
genomic: GTGACTAGGGATGGGCAGACACAGCCGGCTAATGCCAGCGTCATTTTCGGgtgagtttgg ... tcctttgtagGTGCGGTGCTCAACAAGGTGGGGATTTGGGAAGTTCAA
EST: GTGACTAGGGATGGGCAGACACAGCCGGCTAATGCCAGCGTCATTTTCGG GTGCGGTGCTCAACAAGGTGGGGATTTGGGAAGTTCAAACCAAGCCCTTGA
genomic: GTGACTAGGGATGGGCAGACACAGCCGGCTAATGCCAGCGTCATTTTCGGgtgagtttgg ... tcctttgtagGTGCGGTGCTCAACAAGGTGGGGATTTGGGAAGTTCAAACCAAGCCCTTGA
gttgatagtattgaagtcttaagtggagcataaatgactcttctttcctttgtagGTGCGGTGCTCAACAAGGTGGGGATTTGGGAAGTTCAAACCAAGCCCTTGACGGAATTCTTGGTTTTGGTGAGGCAAATACATCAATGCTATCACAACTA
tgttgat putative branch site (score: 21)
ctcttctttcctttgt putative PPT
ataaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagaacaactgagtaggaaacatgcatcaactaattaacatttgttgatagtattgaagtcttaagtggagcataaatgactcttctttcctttgtagGTGCGGTGCTCAACAAGGTGGGGATTTGGGAAGTTCAAACCAAGCCCTTGACGGAATTCTTGGTTTTGGTGAGGCAAATACATCAATGCTATCACAACTA
- - -aacaact
- - - - - - - - - - -acatgca
- - - - - - - - - - - - - - -caactaa
- - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagca