1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtaatcttatcatactcattatgaaaaaatgtaaatatgtaaattttgtcctttcaaattgaaatttgtaatgcataatttgacaagatccttttgcagGTTGATGCGGCCATAGTTCGAATAATGAAGACGCGGAAGGTCCTGAGCCACACCCTTCTAATAACCGAGCTTTACCAGCAG
species | Zea mays |
transcript | AC177936.6_FGT008 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAACACGAGCACCACTGAGAGAGTGTTCCAGGATCGGCAGTATCAG GTTGATGCGGCCATAGTTCGAATAATGAAKACGCGGAAGGTCCTGAGCCAC
genomic: AAGAAAACACGAGCACCACTGAGAGAGTGTTCCAGGATCGGCAGTATCAGgtgctttaac ... ccttttgcagGTTGATGCGGCCATAGTTCGAATAATGAAGACGCGGAAGGTCCTGAGCCAC
tttgtcctttcaaattgaaatttgtaatgcataatttgacaagatccttttgcagGTTGATGCGGCCATAGTTCGAATAATGAAGACGCGGAAGGTCCTGAGCCACACCCTTCTAATAACCGAGCTTTACCAGCAG
atttgac putative branch site (score: 210)
tccttttgc putative PPT
tttcaaattgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaatcttatcatactcattatgaaaaaatgtaaatatgtaaattttgtcctttcaaattgaaatttgtaatgcataatttgacaagatccttttgcagGTTGATGCGGCCATAGTTCGAATAATGAAGACGCGGAAGGTCCTGAGCCACACCCTTCTAATAACCGAGCTTTACCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - -catactc
- - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcata