1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgatttaggaattcattttgaaccagatagcaaaactcggaactgtatcaactcatcccacgaaactaagattgatttcccatttcccctttgtcccagGAACTATGTGGTCCAACATGTTTTGAAACAGAAAATTCCTTATGCAAATGCACGCTTGGCATCTCTGTTTGAAGGAAAGTATATATATCTCTCAAAGCAG
species | Zea mays |
transcript | AC166636.1_FGT009 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGAAAATATGTGCTCATGGCTTTGAGCTTGCTCAAGATATATTCGG -AACTATGTGGTCCAACATGTTTTGAAACAGAAAATTCCTT
genomic: ATTGTGAAAATATGTGCTCATGGCTTTGAGCTTGCTCAAGATATATTCGGgtaaaccctt ... tttgtcccagGAACTATGTGGTCCAACATGTTTTGAAACAGAAAATTCCTT
gtatcaactcatcccacgaaactaagattgatttcccatttcccctttgtcccagGAACTATGTGGTCCAACATGTTTTGAAACAGAAAATTCCTTATGCAAATGCACGCTTGGCATCTCTGTTTGAAGGAAAGTATATATATCTCTCAAAGCAG
gattgat putative branch site (score: 44)
tttcccatttcccctt CT-rich tract
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatttaggaattcattttgaaccagatagcaaaactcggaactgtatcaactcatcccacgaaactaagattgatttcccatttcccctttgtcccagGAACTATGTGGTCCAACATGTTTTGAAACAGAAAATTCCTTATGCAAATGCACGCTTGGCATCTCTGTTTGAAGGAAAGTATATATATCTCTCAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - ttcattt
- - - - - - - - - -tgaacca
- - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - catccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa