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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcggcagttcgctccgcctgagcttacaatttgcccatttggggaaagtggcaactggtgtctaatctaaaccttttgcgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTTGATGCAACCCGGTGTCTTGAAAAG

Basic information

species Zea mays
transcript GRMZM2G149802_T01
intron # 29
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149802_T02 (Zea mays), 3'ss of exon 29
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 3'ss of exon 29
gtttgtcggcagttcgctccgcctgagcttacaatttgcccatttggggaaagtggcaactggtgtctaatctaaaccttttgcgtt-taacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTTGATGCAACCCGGTGTCTTGAAAAG
|||||| | | | || ||||| | | |||||| | ||| || |||| ||||| || | ||| |||||||| | |||| ||||||| ||||||||| | ||||||||||| |||||| |||||||||| || |||||||| |||
gtttgttaataaag------acttaagtttacagtgggttcatttgtgctttgtg--------tgactaa-ctaaatct---gtgttataacagTATACGGAGGCAGATCTATACAGGCAATTGTCATACTTTTGCTATGTAGTTGATGCAACTCGATGTCTTGAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211239814|gb|FL461004.1|FL461004
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
EST: gi|74242012|gb|DT649926.1|DT649926
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
EST: gi|211101403|gb|FL454838.1|FL454838
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGCTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
EST: gi|211496413|gb|FL279203.1|FL279203
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatttggggaaagtggcaactggtgtctaatctaaaccttttgcgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTTGATGCAACCCGGTGTCTTGAAAAG
                               atctaaa  putative branch site (score: 3)
 ccttttgc  CT-rich tract
 taatctaaa  TA-rich tract