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gcatgtcaaatgatccaaaatttcttgttgacaacattgtgtccaatacctatatactatgctttttgaatttggaaacatttttacccatacttttctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
species | Zea mays |
transcript | GRMZM2G132712_T03 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGAGAAATCCTGTTGGTCGAAG GGAACCTCTTGTTACAAATATCATGAGGAGAAACTTGTTTGNTCAGEST: gi|60340338|gb|DN207311.1|DN207311
genomic: ATGAAGAGAAATCCTGTTGGTCGAAGgcatgtcaaa ... tctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
EST: ACCGAGCCTCCAACAGACAACCTTATGAAGAGAAATCCTGTTGGTCGAAG GGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAGEST: gi|116821995|gb|EC865361.1|EC865361
genomic: ACCGAGCCTCCAACAGACAACCTTATGAAGAGAAATCCTGTTGGTCGAAGgcatgtcaaa ... tctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
EST: ACCGAGCCTCCAACAGACAACCTTATGAAGAGAAATCCTGTTGGTCGAAG GGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAGEST: gi|5296205|gb|AI782885.1|AI782885
genomic: ACCGAGCCTCCAACAGACAACCTTATGAAGAGAAATCCTGTTGGTCGAAGgcatgtcaaa ... tctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
EST: ATGAAGAGAAATCCTGTTGGTCGAAG GGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
genomic: ATGAAGAGAAATCCTGTTGGTCGAAGgcatgtcaaa ... tctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
atatactatgctttttgaatttggaaacatttttacccatacttttctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
cttttctact CT-rich tract
tttttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtcaaatgatccaaaatttcttgttgacaacattgtgtccaatacctatatactatgctttttgaatttggaaacatttttacccatacttttctactgcagGGAACCTCTTGTTACAAATATCATGTGGAGAAACTTGTTTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA