Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggctgttatgaaatttcatgtatcagcatcatccatacaagtatatagtttccatctgtatactgatatgtatttatttttgcatcaagGTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCACTTATGAACTCTGCTATATCTAACATTCAAAAGGATCTTCTTAGCCAAC

Basic information

species Zea mays
transcript GRMZM2G057402_T02
intron # 29
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057402_T02 (Zea mays), 3'ss of exon 29
lower sequence: LOC_Os02g27110.1 (Oryza sativa), 3'ss of exon 37
---gtagggctgttatgaaatttcatgt-atcagcatcatccatacaagtatatagtttccatctgtatactgat--atgtatttatttttgca-tcaagGTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCACTTATGAACTCTGCTATATCTAACATTCAAAAGGATCTTCTTAGCCAAC
   | |   || | |||  ||   |  | ||   |   || |    | |||      |   ||   | ||   |   ||   ||||| ||  || | |||||||| ||||||||||| || ||||| |||||||||||| | ||||||||||| ||||  |||||||| ||||||||||| || ||| |||| |||||||
tgagaaaaactttcatgccatggtacattattgtccctatacgctgatgtacgctactctaattattttaagcactgattcctttatcttaacaatgaagGTCCGCATAGCTCAAAGGTATCGGGAAGAATTGTGCATGAGACAAAGTGCACTAATGAGTTCTGCTATGTCTAACATTCAGAAAGATATTCTCAGCCAAC

upper sequence: GRMZM2G057402_T02 (Zea mays), 3'ss of exon 29
lower sequence: Vv05s0020g00410.t01 (Vitis vinifera), 3'ss of exon 58
--gtagggctgtta-tgaaatttcatgtatca-gcatcatccatacaagtatatagtttccatctgtatactgatatgtatttatt---tttgcatcaagGTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCACTTATGAACTCTGCTATATCTAACATTCAAAAGGATCTTCTTAGCCAAC
      |  ||| | |   |||    || ||| ||||  | || |  |  | | |   |   |   |      ||||  || | ||   | || |   || || | |||  ||||||||  |  ||| |  | |||||||| || ||||| ||||| |    |||||| || |||||||||||||||||||||||||| |
ctaagagattgtaacttttattctgcgtgtcatgcatttttcagattataagagaaactaattgcattattgaatattcatcttttcaatgtgaaatcagATCAGGATAAATCAAAGATTTCATGAGAATGTATGCATGCGACAGAGTGCTCTTATTAGTAATGCTATCTCAAACATTCAAAAGGATCTTCTTAGCCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211233784|gb|FL155744.1|FL155744
EST:     GGTTCTGGTCGTCGTTGATGACTGCATTGGGAAACATGGAGCATATGCCG                         GTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCA
genomic: GGTTCTGGTCGTCGTTGATGACTGCATTGGGAAACATGGAGCATATGCCGgtagggctgt ... ttgcatcaagGTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCA
EST: gi|76016121|gb|DT943291.1|DT943291
EST:     GGTTCTGGTCGTCGTTGATGACTGCATTGGGAAACATGGAGCATATGCCG                         GTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCA
genomic: GGTTCTGGTCGTCGTTGATGACTGCATTGGGAAACATGGAGCATATGCCGgtagggctgt ... ttgcatcaagGTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaagtatatagtttccatctgtatactgatatgtatttatttttgcatcaagGTCCGTATAGCTCAAAGATACCGGGAGGAATTGTGCATGCGGCAAAGTGCACTTATGAACTCTGCTATATCTAACATTCAAAAGGATCTTCTTAGCCAAC
                          tactgat  putative branch site (score: 2)
                                      tttattttt  putative PPT
                        tatactgatatgtatt  TA-rich tract