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gtagaacatgcaaaaccactgttattaacaacattcttcctgcagcctttctttttttctttggtaaccaacattgttcggtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTCACTGGGGTGATGCTGCTTCAAACAATCCAAATCCATCTACTCACTCAG
species | Zea mays |
transcript | GRMZM2G009849_T03 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGATGCCATCGGGACCTATGGGTCAAACTEST: gi|12045716|gb|BF727855.1|BF727855
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTEST: gi|87152573|gb|DY397362.1|DY397362
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGATGCCATCGGGACCTATGGGTCAAACTEST: gi|78180940|gb|DV551313.1|DV551313
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTEST: gi|67035401|gb|CO463934.1|CO463934
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: TGCTGAACCTCAGCCCATA-TTCTAGCATACATTGATCTTAAATCTC-AG ACCCTTGCTGCTGCTAGAATGTEST: gi|22489973|gb|BU049896.1|BU049896
genomic: TGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAA-TCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATEST: gi|67019308|gb|CO448057.1|CO448057
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAAT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTEST: gi|32851907|gb|CD991588.1|CD991588
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTEST: gi|19822797|gb|BQ048821.1|BQ048821
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGATGCCATCGGGACCTATGGGTCAAACTEST: gi|67011174|gb|CO439923.1|CO439923
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTEST: gi|19822549|gb|BQ048573.1|BQ048573
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACT
EST: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAG ACCCTTGCTGCTGCTAGAATGTTGATGCCA
genomic: ATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatg ... gtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCA
cttcctgcagcctttctttttttctttggtaaccaacattgttcggtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTCACTGGGGTGATGCTGCTTCAAACAATCCAAATCCATCTACTCACTCAG
tggtaac putative branch site (score: 116)
tttctttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaacatgcaaaaccactgttattaacaacattcttcctgcagcctttctttttttctttggtaaccaacattgttcggtcgttgtagACCCTTGCTGCTGCTAGAATGTTGACGCCATCGGGACCTATGGGTCAAACTCACTGGGGTGATGCTGCTTCAAACAATCCAAATCCATCTACTCACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT