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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacctgaccatatggtgatgcttgttctttttttattaccctatttattttactgaaccttttctttcagGCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCCAAGCCAAAGGCCAAGGGGAGTATTTGGGTTCTGGTCGTCGTTGATGACT

Basic information

species Zea mays
transcript GRMZM2G057402_T01
intron # 28
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057402_T01 (Zea mays), 3'ss of exon 28
lower sequence: LOC_Os02g27110.1 (Oryza sativa), 3'ss of exon 36
gtaggtacctgaccatatggtgatgcttgttctttttttattaccctatttattttactgaaccttttctttcagGCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCCAAGCCAAAGGCCAAGGGGAGTATTTGGGTTCTGGTCGTCGTTGATGACT
||| | ||   |    ||| ||    || ||||| | || || |||| ||  |  |||| || ||||| || ||||||||| || || || || || ||||||||||| ||||||||||||||||| | ||| ||||| || || ||  ||||||||||||| || || ||||| 
gtacgcacactattgcatgttgtgtttttttcttatattttttccctgttgttggtactaaatcttttgttgcagGCTTCTTAATATTTCTGAAATACGATTTAGAGTCTCAATGGCAATGTCCCCTACCCAGAGGCCGAGAGGGGTTCTTGGGTTCTGGTCTTCCTTAATGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211233784|gb|FL155744.1|FL155744
EST:     ATAGCAATCAACCTTCAGCTGTTTCAGTGGCACCCCATACTGAAAATTGG                         GCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCC
genomic: ATAGCAATCAACCTTCAGCTGTTTCAGTGG-ACCCCATACTGAAAATTGGgtaggtacct ... tttctttcagGCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCC
EST: gi|76016121|gb|DT943291.1|DT943291
EST:     TATAGCAATCAACCTTCAGCTGTTTCAGTGGACCCCATACTGAAAATTGG                         GCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCC
genomic: TATAGCAATCAACCTTCAGCTGTTTCAGTGGACCCCATACTGAAAATTGGgtaggtacct ... tttctttcagGCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCC
EST: gi|211233783|gb|FL155743.1|FL155743
EST:     TATAGCAATCAACCTTCAGCTGTTTCAGTGGACCCCATACTGAAAATTGG                         GCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCC
genomic: TATAGCAATCAACCTTCAGCTGTTTCAGTGGACCCCATACTGAAAATTGGgtaggtacct ... tttctttcagGCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgcttgttctttttttattaccctatttattttactgaaccttttctttcagGCTTCTGAACATCTCCGAGATCCGATTTAGAGTGTCAATGGCAATGTCCCCAAGCCAAAGGCCAAGGGGAGTATTTGGGTTCTGGTCGTCGTTGATGACT
                                          ccttttctttc  CT-rich tract
         ttctttttttattacc  TA-rich tract