1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
...aactatcaatcatatctagggaaaaaacagttgctctgtttatcaacaggtagctttgttgtgaatttttcttgactcaatttgtatctatctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTATAATTTTGAGAACAACAATTCTATTGACTGGGACCAAATGTAGATGTA
species | Zea mays |
transcript | GRMZM2G084181_T01 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAG GCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTEST: gi|194716955|gb|FK934114.1|FK934114
genomic: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAGgtatgcttgc ... tctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTT
EST: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAG GCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTEST: gi|32910855|gb|CF015667.1|CF015667
genomic: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAGgtatgcttgc ... tctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTT
EST: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAG GCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTEST: gi|71768567|gb|DR966504.1|DR966504
genomic: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAGgtatgcttgc ... tctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTT
EST: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAG GCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTEST: gi|71768566|gb|DR966503.1|DR966503
genomic: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAGgtatgcttgc ... tctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTT
EST: TCAGGTCCCAGCTGATCGATGGTGGTTTTCACTTTACAAAGTGATCGAAG GCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTTTT
genomic: TCAGGTCCCAGCTGATCGATGGTGGTCTTCACTTTACAAAGTGATCGAAGgtatgcttgc ... tctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTT
acaggtagctttgttgtgaatttttcttgactcaatttgtatctatctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTATAATTTTGAGAACAACAATTCTATTGACTGGGACCAAATGTAGATGTA
tcttgac putative branch site (score: 111)
tatctatctttttc putative PPT
aatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactatcaatcatatctagggaaaaaacagttgctctgtttatcaacaggtagctttgttgtgaatttttcttgactcaatttgtatctatctttttcagGCCTCGCCACAATGAGCAGATTGGGCCGCAACCGTCTGCAGCAACCTTCTTATAATTTTGAGAACAACAATTCTATTGACTGGGACCAAATGTAGATGTA
- - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - -cagttgc
- - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg