1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtatcatgcttaagaatgctcacattaaaagacttcactgttgcataaaagttgaacatattctgattctgatactagagcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAATACTTTTTACATGCGATGAATG
species | Zea mays |
transcript | GRMZM2G071441_T01 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCATACAGCCACTACCCCAAAAAGGNCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAEST: gi|211172394|gb|FL129173.1|FL129173
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|32865867|gb|CF005549.1|CF005549
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|32834007|gb|CD973685.1|CD973685
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|67023760|gb|CO452509.1|CO452509
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|37382211|gb|CF628041.1|CF628041
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|32911283|gb|CF016095.1|CF016095
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|32940265|gb|CF045084.1|CF045084
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|211172392|gb|FL129171.1|FL129171
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|211172393|gb|FL129172.1|FL129172
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|211172395|gb|FL129174.1|FL129174
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGSRACAACCAG AASCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|91050276|gb|EB160694.1|EB160694
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTATTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|37382947|gb|CF628445.1|CF628445
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAAEST: gi|88750432|gb|DY534573.1|DY534573
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
EST: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAG AACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
genomic: TGGAGCATACAGCCACCACCCCAAAAAGGTCCTACTTAGGCAACAACCAGgtatcatgct ... gcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAA
tcactgttgcataaaagttgaacatattctgattctgatactagagcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAATACTTTTTACATGCGATGAATG
ttctgat putative branch site (score: 45)
ataaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcatgcttaagaatgctcacattaaaagacttcactgttgcataaaagttgaacatattctgattctgatactagagcaattacagAACCGCCATTCTTTTGAGAAGCCTGTGAGGATTTACAACTAAAGCTAGGAATACTTTTTACATGCGATGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT