1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...agggggaaaataacgctcctgtgaatgtgtgcattaatttgtaacctgccgagctaatcaaagccgctgtcctcctcatctgcaatctggctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGACATCACCGACACGTGCAAGGACCTCGGCGAGGTCAAGAAGGTGTTCCAGC
species | Zea mays |
transcript | GRMZM2G463904_T03 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: TGCTTACCGGCAAAAAGCCTGTCGACGACGAGTGCAACCTTCACCACTTG ATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGACEST: gi|166416593|gb|EG304671.1|EG304671
genomic: TGCTTACCGGCAAAAAGCCTGTCGACGACGAGTGCAACCTTCACCACTTGgtaactattc ... ctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGAC
EST: TCGACGACGAGTGCAACCTTCACCACTTG ATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTCGACCAGGAC
genomic: TCGACGACGAGTGCAACCTTCACCACTTGgtaactattc ... ctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGAC
ctgccgagctaatcaaagccgctgtcctcctcatctgcaatctggctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGACATCACCGACACGTGCAAGGACCTCGGCGAGGTCAAGAAGGTGTTCCAGC
agctaat putative branch site (score: 11)
ctacctcc putative PPT
taatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggggaaaataacgctcctgtgaatgtgtgcattaatttgtaacctgccgagctaatcaaagccgctgtcctcctcatctgcaatctggctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGACATCACCGACACGTGCAAGGACCTCGGCGAGGTCAAGAAGGTGTTCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - aaaataa
- - - - - - - gctcctg
- - - - - - - - - - -tgaatgt
- - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - cctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa