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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctctaacatatcaatttcaattaatgtagcagtattatgttcaaaaaattaatgttgcaatatttcagtaaattcaaatattattgttttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTACCTTCGACTGCCCCCCTGTATCTAGTCTGATTACTAGTGCTAGTGCTACA

Basic information

species Zea mays
transcript GRMZM2G149802_T01
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149802_T02 (Zea mays), 3'ss of exon 26
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 3'ss of exon 26
gtaaacctctaacatatcaatttcaattaatgtagcagtattatgttcaaaaaattaatgttgcaatatttcagtaaattcaaatattattgttttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTACCTTCGACTGCCCCCCTGTATCTAGTCTGATTACTAGTGCTAGTGCTACA
                      | |||||  ||    | ||| || |   |  | |  || |    || || ||| |    ||  | |    |  || |  |||||||||||||||||| || ||||| || ||||||||||||||||||  |||||| |||||||||||||| ||||||||||||| | || ||||  ||  |
---------------------gtaaattacagtgtatgcattttgcttttattactg-tgatctgttactttagttag---aatgacttgaataatatttgcagATATCGTGGTTGTGAGCCCCTGCGATTATCATGCCCAAGCTGTTCTACTACCTTTGACTGCCCCCCTGTGTCTAGTCTGATTATTGGTTCTAGCTCTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32939296|gb|CF044115.1|CF044115
EST:     CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG                         ATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTA
genomic: CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAGgtaaacctct ... ttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTA
EST: gi|166503145|gb|EG187999.1|EG187999
EST:     CTGTAATCGATGACGAAGATGAGAG                         ATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTA
genomic: CTGTAATCGATGACGAAGATGAGAGgtaaacctct ... ttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTA
EST: gi|32938785|gb|CF043604.1|CF043604
EST:     CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG                         ATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGT
genomic: CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAGgtaaacctct ... ttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGT
EST: gi|211402399|gb|FL354720.1|FL354720
EST:     CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG                         ATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTAC
genomic: CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAGgtaaacctct ... ttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTAC
EST: gi|32938920|gb|CF043739.1|CF043739
EST:     CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG                         ATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGT
genomic: CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAGgtaaacctct ... ttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGT
EST: gi|74242013|gb|DT649927.1|DT649927
EST:     CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG                         ATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTAC
genomic: CAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAGgtaaacctct ... ttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaattaatgttgcaatatttcagtaaattcaaatattattgttttaatgacagATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGTTCTGGTACCTTCGACTGCCCCCCTGTATCTAGTCTGATTACTAGTGCTAGTGCTACA
                                           ttttaat  putative branch site (score: 3)
                                        ttgtttt  CT-rich tract
               aatatttcagtaaatt  TA-rich tract