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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacaatactcttgcttgtttattaggctacttttttctcactgcttgtattctcaaatatcttcttttcatgcagGCTCAAAATGCGGATGCATTGGATTCAAGTTGATAATCAATTACCATTTGTTCCTATGCCTGTACTTTTCTGTCCTCAAAAGATTGAAAATCAGTCAGAC

Basic information

species Zea mays
transcript GRMZM2G057402_T02
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057402_T02 (Zea mays), 3'ss of exon 26
lower sequence: LOC_Os02g27110.1 (Oryza sativa), 3'ss of exon 34
gtaacaacaatac--tcttgcttgtttattaggctacttttttc----------tcactgctt------gtattctcaaatat--cttcttttcatg-cagGCTCAAAATGCGGATGCATTGGATTCAAGTTGATAATCAATTACCATTTGTTCCTATGCCTGTACTTTTCTGTCCTCAAAAGATTGAAAATCAGTCAGAC
|| ||||  ||    | ||| || |||  |||| | || |||||          |  || |||      ||| |   |  | |  |||||||| ||| |||||||||||||| |||||||||||||||||| || ||||| ||||| || |||| ||||||||| ||||| |||||||||| ||| || ||||| ||||||
gtgacaatcatgtgtttttggttatttgctaggttgctgttttccgctcaaaattttctacttttttccgtacttcaatttgttgcttcttttaatggcagGCTCAAAATGCAGATGCATTGGATTCAAGTGGACAATCAGTTACCTTTCGTTCTTATGCCTGTCCTTTTTTGTCCTCAAAGGATGGAGAATCAATCAGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211233783|gb|FL155743.1|FL155743
EST:     CAGCAACTGTTACTTGCATACTCATCTGGAATTGGCTCTGGAGTAAATCG                         GCTCAAAATGCGGATGCATTGGATTCAAGTTGATAATCAATTACCATTTGT
genomic: CAGCAACTGTTACTTGCATACTCATCTGGAATTGGCTCTGGAGTAAATCGgtaacaacaa ... tttcatgcagGCTCAAAATGCGGATGCATTGGATTCAAGTTGATAATCAATTACCATTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaggctacttttttctcactgcttgtattctcaaatatcttcttttcatgcagGCTCAAAATGCGGATGCATTGGATTCAAGTTGATAATCAATTACCATTTGTTCCTATGCCTGTACTTTTCTGTCCTCAAAAGATTGAAAATCAGTCAGAC
              ttctcac  putative branch site (score: 2)
                                     tatcttcttttcat  putative PPT
                                  aaatatcttctttt  TA-rich tract