1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...ttttattctttgaattgtttctgtaataagaaactcgtatgcatctgtgttcaaatttgaataaattgctgatggttgctttaatttctttcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTG
species | Zea mays |
transcript | GRMZM2G030422_T03 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|22473364|gb|BU037844.1|BU037844
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: GACTTCAGATGTCGGATTTTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAEST: gi|7227452|gb|AW566093.1|AW566093
genomic: GACTTCA-ATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTEST: gi|76010934|gb|DT938104.1|DT938104
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTT
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
tgtgttcaaatttgaataaattgctgatggttgctttaatttctttcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTG
ttgctttaatttcttt CT-rich tract
tcaaatttgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttattctttgaattgtttctgtaataagaaactcgtatgcatctgtgttcaaatttgaataaattgctgatggttgctttaatttctttcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG