Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctaaccttttgtgaccttgtcattatctttgtccatttaataacagaacagacttggtaactagcgccatatgcatttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG

Basic information

species Zea mays
transcript GRMZM2G025340_T01
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025340_T01 (Zea mays), 3'ss of exon 26
lower sequence: GLYMA09G36430.1 (Glycine max), 3'ss of exon 26
-----------------------------------------------------------------------------------------------------gtgagctaaccttttgtgaccttgtcattat-ctttgtcca---tttaataacaga---acagacttggtaactagcgccatatgcatttgg----cagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG
                                                                                                       |   |  | | || || | |||| | | |  ||| |  |   ||||  ||       |   | ||    ||||  |  || || ||||      |||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||  ||||| || || || |||||||| || || || |||||||  ||
gtatatttgtttgctacgattaatttagcattttcattgttttgcctttatatagtttaaattatagtgctatattttttgttgcttacatatgcactgcaaagttgtgccttgttttgcctttgttactttgttttatataaaatttagaaatctgctcatgaagtttcctacta-tgggatttggatttaatcttcagGATGCAGTAAGCCGAAAAATCAGCTTGGACACCCTAGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATTACTCCGCATGATACTAG

upper sequence: GRMZM2G025340_T01 (Zea mays), 3'ss of exon 26
lower sequence: Vv16s0013g02080.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------gtgagctaacc---ttttgtgaccttgt-cattatctttgtccatttaataacagaaca---gacttggtaactagcgccatatgcatttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG
                        ||   || ||   | |   ||   |||    | |  |||   || | |    ||| ||   ||   | |  ||     | | |    |   |||||||| || ||||| || || ||||| |         | ||||||||  | |||||||| ||||||||||| ||||| |||||||||||||||||
gtaagttcatgtgatatggtcgattggaatagccagatatcaagaaaatgtatggtgttgttgaa-atgtgaagctagatcatttgaaaagttttcttatttcttgtttcatcttcagGATGCAGTTAGCCGAAAGATCAGCTTTG---------TGGATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACCCCTCATGATATCAG

upper sequence: GRMZM2G025340_T01 (Zea mays), 3'ss of exon 26
lower sequence: Vv16s0013g00490.t01 (Vitis vinifera), 3'ss of exon 26
---------------------------gtgagctaaccttttgtgaccttgtcattatctttgtccatttaataacagaaca---gacttggtaactagcgccatatgcatttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG
                              ||| |    |     |  |      | |  |||   || | |    ||| ||   ||   | |  ||     | | |    |   |||||||| || ||||| || || ||||| |||||||| ||  |||||||  | |||||||| ||||||||||| ||||| || ||||||||||||||
gtaagttcatgtgatatggtcgattgtaatagccagatatccagaaaatgtatggtgttgttgaa-atgtgaagctagatcatttgaaaagttttcttatttcttgtttcatcttcagGATGCAGTTAGCCGGAAGATCAGCTTGGACACCCTTGTGAATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACTCCTCATGATATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211018176|gb|FL213621.1|FL213621
EST:     GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATG                         GATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
genomic: GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATGgtgagctaac ... catttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
EST: gi|32932707|gb|CF037519.1|CF037519
EST:     GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATG                         GATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
genomic: GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATGgtgagctaac ... catttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
EST: gi|211018178|gb|FL213623.1|FL213623
EST:     GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATG                         GATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
genomic: GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATGgtgagctaac ... catttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
EST: gi|32931357|gb|CF036169.1|CF036169
EST:     GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATG                         GATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
genomic: GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATGgtgagctaac ... catttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
EST: gi|32930376|gb|CF035188.1|CF035188
EST:     GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATG                         GATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCCGTC
genomic: GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATGgtgagctaac ... catttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
EST: gi|32931744|gb|CF036556.1|CF036556
EST:     GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATG                         GATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC
genomic: GAATGGCCGAAGCACCATTTAGGGCCATGGATGAGTTTGATGTATTCATGgtgagctaac ... catttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtccatttaataacagaacagacttggtaactagcgccatatgcatttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG
      atttaataacagaa  TA-rich tract