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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcaactattttgacacccaataattaacctcttatgacatggatggataacccaattacagtctttcttactttttgttttttgctttttctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGCAGATTAGTTGCCTATTGTAAAAAAGTAAGTACCATTATGTATACGCACA

Basic information

species Zea mays
transcript GRMZM2G443953_T03
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91873400|gb|EB403357.1|EB403357
EST:     TGAACCCGATGATTCAACAGATGGCGGTGTCCTTGTGAATGGGAATGATG                         TGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: TGAACCCGATGATTCAACAGATGGCGGTGTCCTTGTGAATGGGAATGATGgtgaggaaca ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataacccaattacagtctttcttactttttgttttttgctttttctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGCAGATTAGTTGCCTATTGTAAAAAAGTAAGTACCATTATGTATACGCACA
                    ttcttac  putative branch site (score: 2)
              cagtctttcttacttt  CT-rich tract
                       ttactttttgtttttt  TA-rich tract