1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...gaaactgtacctgacaagtgcattggaaagtgtaatttcactctctttataccaggaacttgggattctcactaaatactgatgctacatatgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAAGGAAGCATGGTGGAGGGATCCGATTTGGTGAGATGGAGCGTGATGCCC
species | Zea mays |
transcript | GRMZM2G388892_T02 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAEST: gi|211454577|gb|FL410335.1|FL410335
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAEST: gi|211368775|gb|FL398828.1|FL398828
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG GTCCGCACTACCGGTCGTATAGACMAGATAACAAGACAACCCATAGGAGGAEST: gi|60672564|gb|DN475267.1|DN475267
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAEST: gi|60359336|gb|DN226309.1|DN226309
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAEST: gi|60394928|gb|DN227797.1|DN227797
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
tttataccaggaacttgggattctcactaaatactgatgctacatatgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAAGGAAGCATGGTGGAGGGATCCGATTTGGTGAGATGGAGCGTGATGCCC
tactgat putative branch site (score: 2)
actaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaactgtacctgacaagtgcattggaaagtgtaatttcactctctttataccaggaacttgggattctcactaaatactgatgctacatatgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGAAGGAAGCATGGTGGAGGGATCCGATTTGGTGAGATGGAGCGTGATGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA