1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' |
gtgcatattttctattgagtcttgaatatcttaaatgattggcatcatttctttcaatatagtgtttgctgattcttattacctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG
species | Zea mays |
transcript | GRMZM2G149802_T01 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAG TTCCAATCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGEST: gi|32938785|gb|CF043604.1|CF043604
genomic: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAGgtgcatattt ... cctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTG
EST: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAG TTCCAATCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGEST: gi|211402399|gb|FL354720.1|FL354720
genomic: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAGgtgcatattt ... cctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTG
EST: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAG TTCCAATCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGEST: gi|32938920|gb|CF043739.1|CF043739
genomic: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAGgtgcatattt ... cctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTG
EST: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAG TTCCAATCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGEST: gi|74242013|gb|DT649927.1|DT649927
genomic: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAGgtgcatattt ... cctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTG
EST: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAG TTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTG
genomic: GCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAGgtgcatattt ... cctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTG
gattggcatcatttctttcaatatagtgtttgctgattcttattacctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG
tgctgat putative branch site (score: 3)
atttctttcaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatattttctattgagtcttgaatatcttaaatgattggcatcatttctttcaatatagtgtttgctgattcttattacctggatcagTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGTTATCTGTAATCGATGACGAAGATGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG