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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgctattccaagtgaacaatgactcatacaccacctttgcagtcgtattaaagctataacacaagtaaccaaccctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATTAATCAACACTTCCATCTTTGTGCCCGATAGGAAATTTTGTGCTTCCCTT

Basic information

species Zea mays
transcript GRMZM2G141587_T01
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4647130|gb|AI622205.1|AI622205
EST:     TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAG                         GTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
genomic: TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAGgtgaaatgct ... cctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
EST: gi|60400527|gb|DN233334.1|DN233334
EST:     TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAG                         GTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAGCGGTATT
genomic: TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAGgtgaaatgct ... cctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
EST: gi|12971756|gb|BG267642.1|BG267642
EST:     TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAG                         GTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
genomic: TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAGgtgaaatgct ... cctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
EST: gi|60349089|gb|DN216062.1|DN216062
EST:     TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAG                         GTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
genomic: TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAGgtgaaatgct ... cctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
EST: gi|71438645|gb|DR819695.1|DR819695
EST:     TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAG                         GTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT
genomic: TAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGTGTAGTTTGTAAAGgtgaaatgct ... cctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccacctttgcagtcgtattaaagctataacacaagtaaccaaccctattgcagGTTGCTGACTGCTATAGAGTACATGATATCCATTTTTTCCCCAACGGTATTAATCAACACTTCCATCTTTGTGCCCGATAGGAAATTTTGTGCTTCCCTT
                                  aagtaac  putative branch site (score: 2)
                                            ccctatt  putative PPT
                 tattaaagctataa  TA-rich tract