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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgctattccaagtaattaatactcatataccatagaacattttcagtcatactaaagctataacacaattaacccatcctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAAGCATGAGACGTGCTCTAGGATTGGCTTATCCACATACGAAGTTGGACCA

Basic information

species Zea mays
transcript GRMZM2G124886_T02
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5871516|gb|AW017987.1|AW017987
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|101392738|gb|EB818300.1|EB818300
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|37374749|gb|CF623760.1|CF623760
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCGTTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|6031398|gb|AW076300.1|AW076300
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|78021428|gb|DV489815.1|DV489815
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGATTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211483407|gb|FL444449.1|FL444449
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|67031167|gb|CO459916.1|CO459916
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacattttcagtcatactaaagctataacacaattaacccatcctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAAGCATGAGACGTGCTCTAGGATTGGCTTATCCACATACGAAGTTGGACCA
                                        cccatcct  CT-rich tract
                          tataacacaattaa  TA-rich tract