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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgctattccaagtaattaatactcatataccatagaacattttcagtcatactaaagctataacacaattaacccatcctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAAGCATGAGACGTGCTCTAGGATTGGCTTATCCACATACGAAGTTGGACCA

Basic information

species Zea mays
transcript GRMZM2G124886_T01
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211017875|gb|FL087492.1|FL087492
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|19769827|gb|BQ034548.1|BQ034548
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211017879|gb|FL087496.1|FL087496
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|60398685|gb|DN231501.1|DN231501
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211017880|gb|FL087497.1|FL087497
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|19769352|gb|BQ034073.1|BQ034073
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|19769921|gb|BQ034642.1|BQ034642
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211017881|gb|FL087498.1|FL087498
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|19769756|gb|BQ034477.1|BQ034477
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|19769971|gb|BQ034692.1|BQ034692
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211015104|gb|FL087490.1|FL087490
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|19769823|gb|BQ034544.1|BQ034544
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211015103|gb|FL087489.1|FL087489
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|19769918|gb|BQ034639.1|BQ034639
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAA
EST: gi|211017877|gb|FL087494.1|FL087494
EST:     WATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTMAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA
EST: gi|211017878|gb|FL087495.1|FL087495
EST:     AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAG                         GTTGCTGACTGCTTTCTAGAGTACGAAATCCATTTTTCTCCAGCAGTATTA
genomic: AATAGTGGATCAACGGGACAGCAACTTTGCAAGTGGTTAAGTTTGTAAAGgtgaaatgct ... cctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTT-CTCCAGCAGTATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacattttcagtcatactaaagctataacacaattaacccatcctattgtagGTTGCTGACTGCTTTCTAGAGTACGAAGTCCATTTTCTCCAGCAGTATTAAGCATGAGACGTGCTCTAGGATTGGCTTATCCACATACGAAGTTGGACCA
                                        cccatcct  CT-rich tract
                          tataacacaattaa  TA-rich tract