1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
...cttaaatgggcatgctggttactaatgttttatttcattattatttaccatagtttcctcttataatggataatatctgatgttatgtttctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAGATATTGTAATGAACAGATTCCAT
species | Zea mays |
transcript | GRMZM2G071441_T01 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|32865867|gb|CF005549.1|CF005549
genomic: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|32834007|gb|CD973685.1|CD973685
genomic: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: ACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|67023760|gb|CO452509.1|CO452509
genomic: ACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: GTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|37382211|gb|CF628041.1|CF628041
genomic: GTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|32940265|gb|CF045084.1|CF045084
genomic: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: TACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|211172393|gb|FL129172.1|FL129172
genomic: TACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|91050276|gb|EB160694.1|EB160694
genomic: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAEST: gi|88750432|gb|DY534573.1|DY534573
genomic: AAGTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
EST: GTACGGATTCAGAAGAGACTCCAAGTTCCTGATGAGCAGTTTCTAAAG TGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
genomic: GTACGGATTCAGAAGAGACTTCAAGTTCCTGATGAGCAGTTTCTAAAGgtattcgttt ... ctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCA
taccatagtttcctcttataatggataatatctgatgttatgtttctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAGATATTGTAATGAACAGATTCCAT
atctgat putative branch site (score: 218)
tttctttcacc putative PPT
ttataatggataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaatgggcatgctggttactaatgttttatttcattattatttaccatagtttcctcttataatggataatatctgatgttatgtttctttcaccagTGGAAATTTGCTCATGTTACATTCAGTAAGCCAGAATACCTCCAAGATTCAGATATTGTAATGAACAGATTCCAT
- - - - ggcatgc
- - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt