1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...atgctgatgctggatgctcttggcatgcacctactagtaatgcgtgcctatagatgtttgttctttttacattaccaggaataaccctgtttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGGCATCAAGAGCGCTATTTCAACCTATGCCATTGACCATAGTCTCGAGAG
species | Zea mays |
transcript | GRMZM2G047093_T01 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|211094638|gb|FL030910.1|FL030910
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32924622|gb|CF029434.1|CF029434
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTEST: gi|32924627|gb|CF029439.1|CF029439
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGT
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTEST: gi|211039204|gb|FL261425.1|FL261425
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGT
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32923660|gb|CF028472.1|CF028472
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACEST: gi|32944990|gb|CF049809.1|CF049809
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAC
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTEST: gi|60345123|gb|DN212096.1|DN212096
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGT
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|211089342|gb|FL470619.1|FL470619
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|211039203|gb|FL261424.1|FL261424
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32924181|gb|CF028993.1|CF028993
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTEST: gi|32924574|gb|CF029386.1|CF029386
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGT
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTEST: gi|32924629|gb|CF029441.1|CF029441
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGT
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTEST: gi|211406573|gb|FL434917.1|FL434917
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGT
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32923887|gb|CF028699.1|CF028699
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACEST: gi|211267719|gb|FL453278.1|FL453278
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAC
EST: GTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32923761|gb|CF028573.1|CF028573
genomic: GTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACEST: gi|60398052|gb|DN230868.1|DN230868
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAC
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|60340635|gb|DN207608.1|DN207608
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|15313502|gb|BI478733.1|BI478733
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|67014809|gb|CO443558.1|CO443558
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|33093540|gb|CF053534.1|CF053534
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAEST: gi|211430406|gb|FL005437.1|FL005437
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTA
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|211543406|gb|FL435454.1|FL435454
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|60349287|gb|DN216260.1|DN216260
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32934431|gb|CF039243.1|CF039243
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACEST: gi|211094639|gb|FL030911.1|FL030911
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAC
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGEST: gi|32923755|gb|CF028567.1|CF028567
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAG
EST: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATA GGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAC
genomic: TGTTCATAAATTGCTGGAGACAGTCTTTGGTGATCAGAATGTTGCAAATAgtaagtttca ... ttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTAC
gcctatagatgtttgttctttttacattaccaggaataaccctgtttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGGCATCAAGAGCGCTATTTCAACCTATGCCATTGACCATAGTCTCGAGAG
gaataac putative branch site (score: 224)
ccctgtttttc CT-rich tract
ttctttttacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctgatgctggatgctcttggcatgcacctactagtaatgcgtgcctatagatgtttgttctttttacattaccaggaataaccctgtttttcaacagGGTGGAAGGCACGGTGCGCGGAATATTTTCCGTACTCGACGTACTTTGAAGGCATCAAGAGCGCTATTTCAACCTATGCCATTGACCATAGTCTCGAGAG
- gctgatg
- - - - - tggatgc
- - - - - - - - - - -ggcatgc
- - - - - - - - - - - - - - - - - - - - tgcgtgc