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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatttcttacgttattcaggttctgttttcccaagtcttatttgatcatggatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG

Basic information

species Zea mays
transcript GRMZM2G009849_T02
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009849_T02 (Zea mays), 3'ss of exon 25
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 3'ss of exon 42
gttagtatttcttacgttattcaggttctgttttcccaagtcttatttgatcatgg---atctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG
|| || ||||  ||  || || |||||   ||||  ||       | ||||  |||   | ||  |||||||||||||| || ||||||||| ||||||||||||| ||||| |||||||||||||| ||||| || |||||||||
gtaagcatttgctattttctttaggttaacttttgtcactataactctgatgttggcaaacctttcagGTTCCAAAAACTTTTAATTTTAGCCTATCTGGGGCTTCGTCAAGATCTTGCAAATATGTTTTAAATACTCTCATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649605|gb|BM498424.1|BM498424
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GNTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|20301651|gb|BQ164594.1|BQ164594
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|61118500|gb|DN559461.1|DN559461
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAGTTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|18450492|gb|BM428770.1|BM428770
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|18649578|gb|BM498397.1|BM498397
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GNTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAG
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAG
EST: gi|19822548|gb|BQ048572.1|BQ048572
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGCCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|67035401|gb|CO463934.1|CO463934
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|18450764|gb|BM429042.1|BM429042
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|18648832|gb|BM497651.1|BM497651
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC
EST: gi|18648721|gb|BM497540.1|BM497540
EST:     AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATG                         GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGNCTTGC
genomic: AAGATCTTATTAAGGAAGCTGACAGATTAGTGTCATGCTTGGCTGTTATGgttagtattt ... gatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttacgttattcaggttctgttttcccaagtcttatttgatcatggatctagcagGTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG
                                ttatttgat  TA-rich tract