Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcaactattttgacacccaataattaacctcttatgacatggatggataacccaattacagtctttcttactttttgttttttgctttttctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGCAGATTAGTTGCCTATTGTAAAAAA

Basic information

species Zea mays
transcript GRMZM2G443953_T02
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113608640|gb|DW770619.1|DW770619
EST:     ATGATGGTGAGGAACACTGGG                         TGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: ATGATGGTGAGGAACACTGGGgtatgaacaa ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
EST: gi|78113978|gb|DV532367.1|DV532367
EST:     AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGG                         TGCTTACTCCTAACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGGgtatgaacaa ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
EST: gi|78023257|gb|DV491644.1|DV491644
EST:     AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGG                         TGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGGgtatgaacaa ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
EST: gi|6056952|gb|AW091357.1|AW091357
EST:     AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGG                         TGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGGgtatgaacaa ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
EST: gi|6827275|gb|AW330918.1|AW330918
EST:     AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGG                         TGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGGgtatgaacaa ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
EST: gi|60355832|gb|DN222805.1|DN222805
EST:     AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGG                         TGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC
genomic: AACAGATGGCGGTGTCCTTGTGAATGGGAATGATGGTGAGGAACACTGGGgtatgaacaa ... tctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataacccaattacagtctttcttactttttgttttttgctttttctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGCAGATTAGTTGCCTATTGTAAAAAA
                    ttcttac  putative branch site (score: 2)
              cagtctttcttacttt  CT-rich tract
                       ttactttttgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctcaactattttgacacccaataattaacctcttatgacatggatggataacccaattacagtctttcttactttttgttttttgctttttctttttcagTGCTTACTCCTGACCAGCAGTAGAGATATCACGACAACATTCTGCACCAGCAGATTAGTTGCCTATTGTAAAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT