1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaaagaaagctccattcagaatgggtgcgtacatgttcctctccctccaaggaaacgctaatcatcgtttgtgttggtgttatgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAACCCAGAGTACCACGAGGAGTGAAGACCCAGATAGCATATTGGTGTTTCC
species | Zea mays |
transcript | GRMZM2G155384_T02 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAA ATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAAEST: gi|60347371|gb|DN214344.1|DN214344
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAA ATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAAEST: gi|6031296|gb|AW076153.1|AW076153
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTGGCAACTGAAAA ATACATTCCACTGACCCCAGTACTAGAGGGCTTTGTGATTCTGAAGAAGAAEST: gi|32867559|gb|CF007241.1|CF007241
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAA ATACATTCCACCGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAAEST: gi|38687344|gb|CK144375.1|CK144375
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAA ATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCEST: gi|5847123|gb|AW000202.1|AW000202
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTC
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTGGCAACTGAAAA ATACATTCCACTGACCCCAGTACTAGAGGGCTTTGTGATTCTGAAGAAGAAEST: gi|211334276|gb|FL040639.1|FL040639
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTGGCAACTGAAAT ATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATCCTGAAGAAGAAEST: gi|18175836|gb|BM351006.1|BM351006
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
EST: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAA ATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
genomic: ACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaag ... tgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAA
cctctccctccaaggaaacgctaatcatcgtttgtgttggtgttatgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAACCCAGAGTACCACGAGGAGTGAAGACCCAGATAGCATATTGGTGTTTCC
cgctaat putative branch site (score: 3)
taatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaaagctccattcagaatgggtgcgtacatgttcctctccctccaaggaaacgctaatcatcgtttgtgttggtgttatgttgcgcagATACATTCCACTGACCCCGGTACTAGAGGGCTTTGTGATTCTGAAGAAGAACCCAGAGTACCACGAGGAGTGAAGACCCAGATAGCATATTGGTGTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA