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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgattttgtttcttcgccattgtttgttttgtttgataacaccctaattgtcgtgtcaaacctttcttgcagATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAATTTAG

Basic information

species Zea mays
transcript GRMZM2G440916_T02
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G440916_T01 (Zea mays), 3'ss of exon 23
lower sequence: LOC_Os05g51790.2 (Oryza sativa), 3'ss of exon 23
gtatgtatga-----------ttttgtttcttcgccattgtttgttttgttt---gataacaccctaattgtcgtgtcaaacctttcttgcagATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAATTTAG
|||||| ||            || ||||    | |  || |||||  | |||   |||  ||  | |||    ||  ||||  |||| ||||||||| || ||| |||||||||| || ||||| || ||||||||||| || |||||
gtatgtgtggcagttccttttttgtgttatcacactgttatttgtactattttcagatggcataccaatc--tgtaccaaa--tttcctgcagATGAACATGGTCTTGATTTTGAGCAATATGGCATCCTTATAAAGGTCAAGTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32930688|gb|CF035500.1|CF035500
EST:     ATTCAGTCGTAACTTTCAAGAAATGGCAGTCGCTGGAGAAGTTTCACTGG                         ATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAAT
genomic: ATTCAGTCGTAACTTTCAAGAAATGGCAGTCGCTGGAGAAGTTTCACTGGgtatgtatga ... tttcttgcagATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAAT
EST: gi|33092036|gb|CF052030.1|CF052030
EST:     ATTCAGTCGTAACTTTCAAGAAATGGCAGTCGCTGGAGAAGTTTCACTGG                         ATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAAT
genomic: ATTCAGTCGTAACTTTCAAGAAATGGCAGTCGCTGGAGAAGTTTCACTGGgtatgtatga ... tttcttgcagATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAAT
EST: gi|211323884|gb|FK953780.1|FK953780
EST:     ATTCAGTCGTAACTTTCAAGAAATGGCAGTCGCTGGAGAAGTTTCACTGG                         ATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAAT
genomic: ATTCAGTCGTAACTTTCAAGAAATGGCAGTCGCTGGAGAAGTTTCACTGGgtatgtatga ... tttcttgcagATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtttgttttgtttgataacaccctaattgtcgtgtcaaacctttcttgcagATGAGCACGGTATTGATTTTGATCACTATGGTATTCTTATAAAGGTGAAATTTAG
                                           cctttcttgc  CT-rich tract
     tttgtttt  TA-rich tract