1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtatagcttcttatgcacgagcaataactgcatgattttttttccacacggtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttattaattctgctttgtgtatcatttgagatgtgcaagatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG
species | Zea mays |
transcript | GRMZM2G346168_T02 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: GGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGGTAGCCCTGCAGTTEST: gi|113676171|gb|DW831928.1|DW831928
genomic: GGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: GTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|166609607|gb|EG266550.1|EG266550
genomic: GTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: CTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|161591870|gb|EY960905.1|EY960905
genomic: CTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: CGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: CGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
atcaatgttattaattctgctttgtgtatcatttgagatgtgcaagatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG
tattaat putative branch site (score: 2)
tgttattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagcttcttatgcacgagcaataactgcatgattttttttccacacggtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttattaattctgctttgtgtatcatttgagatgtgcaagatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG