1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...ttttgttatttgtactacatgtgcttgcttatatataggtatgtattgcttctctttcactgttcttgcagaactgagaatttggatcattgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATGCAGAGGATGACGGAGTAGAAGAAAGTCAAGATGAAGCTGTTGAGGTTG
species | Zea mays |
transcript | GRMZM2G141587_T01 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: ACCAGATGATAATGAAGATACTGTTCACGAG GTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATEST: gi|32833263|gb|CD972941.1|CD972941
genomic: ACCAGATGATAATGAAGATACTGTTCACGAGgtactgtgac ... tgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
EST: ACCAGATGATAATGAAGATACTGTTCACGAG GTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATEST: gi|60400527|gb|DN233334.1|DN233334
genomic: ACCAGATGATAATGAAGATACTGTTCACGAGgtactgtgac ... tgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
EST: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAG GTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATEST: gi|78114292|gb|DV532681.1|DV532681
genomic: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAGgtactgtgac ... tgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
EST: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAG GTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATEST: gi|60349089|gb|DN216062.1|DN216062
genomic: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAGgtactgtgac ... tgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
EST: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAG GTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATEST: gi|71438645|gb|DR819695.1|DR819695
genomic: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAGgtactgtgac ... tgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
EST: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAG GTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
genomic: ATGTACATGAAGAGATGGTACCAGATGATAATGAAGATACTGTTCACGAGgtactgtgac ... tgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGAT
ttgcttctctttcactgttcttgcagaactgagaatttggatcattgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATGCAGAGGATGACGGAGTAGAAGAAAGTCAAGATGAAGCTGTTGAGGTTG
agaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttatttgtactacatgtgcttgcttatatataggtatgtattgcttctctttcactgttcttgcagaactgagaatttggatcattgttcaacagGTTATTGAGGATGGTGGAGTAGAGAGTCAAGAAGATGCTGTTGAGGTCGATGCAGAGGATGACGGAGTAGAAGAAAGTCAAGATGAAGCTGTTGAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT